PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G287100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 104aa MW: 10543.7 Da PI: 6.74 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.3 | 6.6e-27 | 34 | 85 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y+eC++NhAa +Gg+avDGC+Ef++ ++ l CaACgCHR+FH+re + Brast05G287100.1.p 34 VVQYRECQRNHAAGIGGYAVDGCREFLAC----LPPQDLLCAACGCHRSFHKRELA 85 689*************************9....56889***************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-14 | 34 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-23 | 35 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-21 | 36 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.095 | 37 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MGPKGQLANG NSTAAVSEAE LSKQAEQDGG GKVVVQYREC QRNHAAGIGG YAVDGCREFL 60 ACLPPQDLLC AACGCHRSFH KRELAADSDS GFSSSSAAAA AGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G287100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238788.1 | 1e-53 | mini zinc finger protein 1 | ||||
Swissprot | Q2Q493 | 4e-20 | MIF3_ARATH; Mini zinc finger protein 3 | ||||
TrEMBL | I1IUV5 | 3e-52 | I1IUV5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G43960.1 | 4e-53 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18835.1 | 9e-22 | mini zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Brast05G287100.1.p |