PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G284000.6.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 735aa MW: 82639.3 Da PI: 6.3253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G284000.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	385.2	7.6e-118	359	730	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+a++l+ ++P+ Brast05G284000.6.p 359 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYLAACPFK 446 5789**********************************************************999999...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++sh++ Nq+Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp+lRiTg++ pe+g +e++eetg+rL+++Ae+lgvpfe++ Brast05G284000.6.p 447 RLSHFLSNQTILSMTKNASTVHIIDFGIYFGLQWPCLIRRLSKREGGPPKLRITGIDVPEPGfrPTERIEETGQRLEEYAERLGVPFEYHG 537 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e+++ e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+l Brast05G284000.6.p 538 -IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDML 627 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l++gW Brast05G284000.6.p 628 EATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVAKAKVKVKDIYHKDFVIDEDSGWLLQGW 718 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r +++++ W+ Brast05G284000.6.p 719 KGRIIYAITTWK 730 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.482	333	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-115	359	730	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MQSGPVEQHQ SISGSLIHSM IQFCGAPEYF MFNDPQPVIP PQMAAQPSPS LPVAAALSRA 60 TNNETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAMLRATAK PFYDILGHKF 120 PPSPDRNLSS WSLDSPGESS SSSHAQSLSS VVTSCSSGAV EDSNQSHNIG HCEQLEAYRG 180 LRGQSFQPLV SPSSGVSNAA EALEDPLITN GRIPEYLFES LPNWDFRRGV EEAQKFLPTG 240 DKLVIDLEAA DVSKSQEPGK DIPLNGSKPE VLNAKKNRQS EDLDLIEGRS IKQSAFCSDE 300 PDWIEMFDGL LRQTEQKATV LREKMRTEAS KNSQVTQTKA TTGVRTRGRK PTKNDVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIKQHSK VNGDGSQRLA FCFAQGLEAR LAGTGSQQYH 420 RLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASTVHII DFGIYFGLQW 480 PCLIRRLSKR EGGPPKLRIT GIDVPEPGFR PTERIEETGQ RLEEYAERLG VPFEYHGIAS 540 KWETIRAEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV 600 NGSYSVPFFI TRFREALFHF SALFDMLEAT VPRDDDQRRL IERDLFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF VQSPLNQEIV AKAKVKVKDI YHKDFVIDED SGWLLQGWKG 720 RIIYAITTWK PNNN*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MQSGPVEQHQ SISGSLIHSM IQFCGAPEYF MFNDPQPVIP PQMAAQPSPS LPVAAALSRA  60
TNNETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAMLRATAK PFYDILGHKF  120
PPSPDRNLSS WSLDSPGESS SSSHAQSLSS VVTSCSSGAV EDSNQSHNIG HCEQLEAYRG  180
LRGQSFQPLV SPSSGVSNAA EALEDPLITN GRIPEYLFES LPNWDFRRGV EEAQKFLPTG  240
DKLVIDLEAA DVSKSQEPGK DIPLNGSKPE VLNAKKNRQS EDLDLIEGRS IKQSAFCSDE  300
PDWIEMFDGL LRQTEQKATV LREKMRTEAS KNSQVTQTKA TTGVRTRGRK PTKNDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIKQHSK VNGDGSQRLA FCFAQGLEAR LAGTGSQQYH  420
RLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASTVHII DFGIYFGLQW  480
PCLIRRLSKR EGGPPKLRIT GIDVPEPGFR PTERIEETGQ RLEEYAERLG VPFEYHGIAS  540
KWETIRAEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLEAT VPRDDDQRRL IERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQEIV AKAKVKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAITTWK PNNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-51	363	730	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G284000.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362796	0.0	AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577096.1	0.0	scarecrow-like protein 9
Refseq	XP_010238778.1	0.0	scarecrow-like protein 9
Refseq	XP_024318771.1	0.0	scarecrow-like protein 9
TrEMBL	I1IUS3	0.0	I1IUS3_BRADI; Uncharacterized protein
STRING	BRADI4G43680.2	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Brast05G284000.6.p