PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G284000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 780aa MW: 87139.4 Da PI: 6.6995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G284000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	385	8.8e-118	404	775	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+a++l+ ++P+ Brast05G284000.1.p 404 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYLAACPFK 491 5789**********************************************************999999...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++sh++ Nq+Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp+lRiTg++ pe+g +e++eetg+rL+++Ae+lgvpfe++ Brast05G284000.1.p 492 RLSHFLSNQTILSMTKNASTVHIIDFGIYFGLQWPCLIRRLSKREGGPPKLRITGIDVPEPGfrPTERIEETGQRLEEYAERLGVPFEYHG 582 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e+++ e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+l Brast05G284000.1.p 583 -IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDML 672 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l++gW Brast05G284000.1.p 673 EATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVAKAKVKVKDIYHKDFVIDEDSGWLLQGW 763 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r +++++ W+ Brast05G284000.1.p 764 KGRIIYAITTWK 775 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.482	378	755	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-115	404	775	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MASTPQPPRG DLAAPPPAAA AQDLAALGLA AARSLRHRPP RHGGQMQSGP VEQHQSISGS 60 LIHSMIQFCG APEYFMFNDP QPVIPPQMAA QPSPSLPVAA ALSRATNNET DNPEDWEFIS 120 DESLNYISRM LMEEDIDEKV SMYQEESAML RATAKPFYDI LGHKFPPSPD RNLSSWSLDS 180 PGESSSSSHA QSLSSVVTSC SSGAVEDSNQ SHNIGHCEQL EAYRGLRGQS FQPLVSPSSG 240 VSNAAEALED PLITNGRIPE YLFESLPNWD FRRGVEEAQK FLPTGDKLVI DLEAADVSKS 300 QEPGKDIPLN GSKPEVLNAK KNRQSEDLDL IEGRSIKQSA FCSDEPDWIE MFDGLLRQTE 360 QKATVLREKM RTEASKNSQV TQTKATTGVR TRGRKPTKND VVDLRTILIH CAQAVAADDR 420 RTANELLKQI KQHSKVNGDG SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA 480 YHLYLAACPF KRLSHFLSNQ TILSMTKNAS TVHIIDFGIY FGLQWPCLIR RLSKREGGPP 540 KLRITGIDVP EPGFRPTERI EETGQRLEEY AERLGVPFEY HGIASKWETI RAEDLKVGKD 600 EVVIVNCLYR FRNLIDETVA VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS VPFFITRFRE 660 ALFHFSALFD MLEATVPRDD DQRRLIERDL FGREALNVIA CEGSDRVERP ETYKQWQVRN 720 LRAGFVQSPL NQEIVAKAKV KVKDIYHKDF VIDEDSGWLL QGWKGRIIYA ITTWKPNNN*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MASTPQPPRG DLAAPPPAAA AQDLAALGLA AARSLRHRPP RHGGQMQSGP VEQHQSISGS  60
LIHSMIQFCG APEYFMFNDP QPVIPPQMAA QPSPSLPVAA ALSRATNNET DNPEDWEFIS  120
DESLNYISRM LMEEDIDEKV SMYQEESAML RATAKPFYDI LGHKFPPSPD RNLSSWSLDS  180
PGESSSSSHA QSLSSVVTSC SSGAVEDSNQ SHNIGHCEQL EAYRGLRGQS FQPLVSPSSG  240
VSNAAEALED PLITNGRIPE YLFESLPNWD FRRGVEEAQK FLPTGDKLVI DLEAADVSKS  300
QEPGKDIPLN GSKPEVLNAK KNRQSEDLDL IEGRSIKQSA FCSDEPDWIE MFDGLLRQTE  360
QKATVLREKM RTEASKNSQV TQTKATTGVR TRGRKPTKND VVDLRTILIH CAQAVAADDR  420
RTANELLKQI KQHSKVNGDG SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA  480
YHLYLAACPF KRLSHFLSNQ TILSMTKNAS TVHIIDFGIY FGLQWPCLIR RLSKREGGPP  540
KLRITGIDVP EPGFRPTERI EETGQRLEEY AERLGVPFEY HGIASKWETI RAEDLKVGKD  600
EVVIVNCLYR FRNLIDETVA VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS VPFFITRFRE  660
ALFHFSALFD MLEATVPRDD DQRRLIERDL FGREALNVIA CEGSDRVERP ETYKQWQVRN  720
LRAGFVQSPL NQEIVAKAKV KVKDIYHKDF VIDEDSGWLL QGWKGRIIYA ITTWKPNNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-50	408	775	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G284000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362796	0.0	AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577096.1	0.0	scarecrow-like protein 9
Refseq	XP_010238778.1	0.0	scarecrow-like protein 9
Refseq	XP_024318771.1	0.0	scarecrow-like protein 9
TrEMBL	I1IUS3	0.0	I1IUS3_BRADI; Uncharacterized protein
STRING	BRADI4G43680.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Brast05G284000.1.p