PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G277700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 537aa    MW: 57583.9 Da    PI: 7.4667
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G277700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.81.6e-102535202374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklf 84 
                         + lL++cA  v++g l +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al +s++s+++       ss+  aa++  
  Brast05G277700.1.p  53 IGLLYQCASEVAAGALDRANLCLEHIMQLASLDApHALQRLAAVFADALARKLLNLVPGLSRALLTSSSSSSSsspslagSSSGDAARRHM 143
                         679*******************************9*****************************77777666656777766666667788* PP

                GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfA 169
                         +++ P+lk+++lt+N+aIlea+ege+ vH++D++  +s+++QW+aL++a+  R+    +  p+lR+T+v++    ske l +++  La+ A
  Brast05G277700.1.p 144 FDMLPFLKLAYLTTNHAILEAMEGERFVHVVDLSgpASNPAQWIALFHAFRGRSrdgaGVFPHLRVTAVHE----SKEFLGAMAASLAREA 230
                         *********************************87789*************88865544489*********....9*************** PP

                GRAS 170 eelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.......................................... 214
                         e++++pf+f   v+ rledl++ +L    rv++gEalaV+++lqlhrll                                          
  Brast05G277700.1.p 231 EAFDIPFQFAG-VEARLEDLDFAALrhclRVRSGEALAVSVALQLHRLLaadddgrcrrhpggggltplqsimaarssprspssgggssfg 320
                         ***********.799******999876668999********************************************************** PP

                GRAS 215 ...............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                                        + s+s + + +++L+++k lsPkv+v++eqea+hn++ F erf eal+yy++lfd+le  
  Brast05G277700.1.p 321 ellerelntrlqlspdasfyasptmsafssgSGSGSGKPKLESFLSAIKALSPKVMVITEQEANHNGAAFHERFDEALNYYASLFDCLERA 411
                         ****************************998666666667889*********************************************877 PP

                GRAS 275 lpres.....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveee..sg 356
                         ++ ++     e ++ vEr++lg+ei+++va eg+er+erhe++++W  r+e+aG++ v ls+  a++a+ ll+ ++ + g y+v ++  ++
  Brast05G277700.1.p 412 AAGQHrsaaaERARAVERAVLGEEIRSIVAGEGRERKERHERAAQWAGRMEAAGMERVGLSYGGAMEARKLLQSCGlGGGaYQVRHDvqEQ 502
                         665555677688899*************************************************************766689999665588 PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                          ++++W+drpL++vSaWr
  Brast05G277700.1.p 503 RFFFCWHDRPLYAVSAWR 520
                         899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.59326496IPR005202Transcription factor GRAS
PfamPF035145.4E-10053520IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MFQQQLLQQQ QQEDVMSSSA TSSPASTLYS PAMGAGASWV QELSSDQCSV RLIGLLYQCA  60
SEVAAGALDR ANLCLEHIMQ LASLDAPHAL QRLAAVFADA LARKLLNLVP GLSRALLTSS  120
SSSSSSSPSL AGSSSGDAAR RHMFDMLPFL KLAYLTTNHA ILEAMEGERF VHVVDLSGPA  180
SNPAQWIALF HAFRGRSRDG AGVFPHLRVT AVHESKEFLG AMAASLAREA EAFDIPFQFA  240
GVEARLEDLD FAALRHCLRV RSGEALAVSV ALQLHRLLAA DDDGRCRRHP GGGGLTPLQS  300
IMAARSSPRS PSSGGGSSFG ELLERELNTR LQLSPDASFY ASPTMSAFSS GSGSGSGKPK  360
LESFLSAIKA LSPKVMVITE QEANHNGAAF HERFDEALNY YASLFDCLER AAAGQHRSAA  420
AERARAVERA VLGEEIRSIV AGEGRERKER HERAAQWAGR MEAAGMERVG LSYGGAMEAR  480
KLLQSCGLGG GAYQVRHDVQ EQRFFFCWHD RPLYAVSAWR PAGAGPASGY HQRGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-175826825217Protein SCARECROW
5b3h_A3e-175826824216Protein SCARECROW
5b3h_D3e-175826824216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G277700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577073.10.0scarecrow-like protein 3
TrEMBLA0A2K2CTY20.0A0A2K2CTY2_BRADI; Uncharacterized protein
STRINGBRADI4G43200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-81scarecrow-like 3