PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G277500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 735aa MW: 80761.9 Da PI: 6.6868

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G277500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.4	2.4e-13	191	268	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn Y+ e+GF +r ks+ + +g+ +++ +C + gk++++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH + Brast05G277500.1.p 191 DFYNLYSWETGFGIRYGKSRVN-SKGSKCMQEITCCQGGKPAKDGKS----------RRCDCTALIRLLRTDDNGWYVTQHRKVHNHGF 268 6***************9998.5666888999****999887..........9***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-9	191	268	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MELSEPRLGR PMGLGLGGGT MEAVRRAFPG QHFALHVVNR AFGRPDPAER SQQDSSACGV 60 SGARATENRV DLEQPAENPG KSNAQQGSST CGVGEPASSE KSAGSGETEH AGQHHGAPPA 120 PAGIGDDAGA SGTGGWKRRI RRGRIPDERE PAADRVSALE KALTGFAGRQ TDVVVSPTVG 180 TCFDSLAEAY DFYNLYSWET GFGIRYGKSR VNSKGSKCMQ EITCCQGGKP AKDGKSRRCD 240 CTALIRLLRT DDNGWYVTQH RKVHNHGFSM PYYNKLQWPS HKHIDKYTRD LVRQLAENNV 300 NLGVYDTIAS FFGRMENVPF TKRSIRTLCG EVIREQAADD DARKTMETAP TVLGEKDPEN 360 HTREETPFNH RGSTSTNTDS VNMPADPLKY PEQGDTQINA EAGRLADLML AFGDCHLVLK 420 NCTYDDLINS NGTMSGLEEA VKAVKPHLRQ GIFGDLWSRA HNSGGVVSAQ VLTIRDLFRF 480 TRWLTTTTGQ HNLHCVEQHA KYGHGVFEPE QMALLHLYQA ENDEHSCEMS RLQGERDEKI 540 AQYMAKIDEA RKTFEASVQA AKVQYPVSSS YCPLDANELR GQCWTVYLAD CRKEAKDLNA 600 RASNIVEKYG PELQQRHLIE FCSQETNREA LLKYGQSKVK KLKEAGVAQG ENTLHGYMAL 660 LDIEKAYALL ASEEQIANDP DMGRGGEEEY RTNRGNGVAR DVAAGGAGQE NGSEDAPEGL 720 PLQKRLRSGQ SYAR*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MELSEPRLGR PMGLGLGGGT MEAVRRAFPG QHFALHVVNR AFGRPDPAER SQQDSSACGV  60
SGARATENRV DLEQPAENPG KSNAQQGSST CGVGEPASSE KSAGSGETEH AGQHHGAPPA  120
PAGIGDDAGA SGTGGWKRRI RRGRIPDERE PAADRVSALE KALTGFAGRQ TDVVVSPTVG  180
TCFDSLAEAY DFYNLYSWET GFGIRYGKSR VNSKGSKCMQ EITCCQGGKP AKDGKSRRCD  240
CTALIRLLRT DDNGWYVTQH RKVHNHGFSM PYYNKLQWPS HKHIDKYTRD LVRQLAENNV  300
NLGVYDTIAS FFGRMENVPF TKRSIRTLCG EVIREQAADD DARKTMETAP TVLGEKDPEN  360
HTREETPFNH RGSTSTNTDS VNMPADPLKY PEQGDTQINA EAGRLADLML AFGDCHLVLK  420
NCTYDDLINS NGTMSGLEEA VKAVKPHLRQ GIFGDLWSRA HNSGGVVSAQ VLTIRDLFRF  480
TRWLTTTTGQ HNLHCVEQHA KYGHGVFEPE QMALLHLYQA ENDEHSCEMS RLQGERDEKI  540
AQYMAKIDEA RKTFEASVQA AKVQYPVSSS YCPLDANELR GQCWTVYLAD CRKEAKDLNA  600
RASNIVEKYG PELQQRHLIE FCSQETNREA LLKYGQSKVK KLKEAGVAQG ENTLHGYMAL  660
LDIEKAYALL ASEEQIANDP DMGRGGEEEY RTNRGNGVAR DVAAGGAGQE NGSEDAPEGL  720
PLQKRLRSGQ SYAR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G277500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578953.1	0.0	uncharacterized protein LOC100833635
TrEMBL	A0A0Q3EYB7	0.0	A0A0Q3EYB7_BRADI; Uncharacterized protein
STRING	BRADI4G43220.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	6e-12	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Brast05G277500.1.p