PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G275400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 396aa MW: 42970.9 Da PI: 4.2223

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G275400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.4	5.1e-18	11	138	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 +rF+ t e v ++L + ++g++l+ +e i+++diy ++eP+dL + + ka+++ +fF+ +++++ + +r+ r++ +g+W + k Brast05G275400.1.p 11 CRFDLTPLEAVAYFLPRLLSGETLHGAERfIHRADIYgQLEPKDLAAafppANKADRTgARFFFTLSKRQKGSRSRSARSAGAGTWTIQ-K 100 6999999**************7765555**9456*8446653334444366*********************965.6 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++ g ++g k L f +++++ e++ Wvm+eyr Brast05G275400.1.p 101 TIDINDEAGVKKGEEKKLSFKSKKDK--ESSGWVMEEYRC 138 7999**********955555..59******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.606	7	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-9	11	137	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-17	12	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MELDMEVFAL CRFDLTPLEA VAYFLPRLLS GETLHGAERF IHRADIYGQL EPKDLAAAFP 60 PANKADRTGA RFFFTLSKRQ KGSRSRSARS AGAGTWTIQK TIDINDEAGV KKGEEKKLSF 120 KSKKDKESSG WVMEEYRCLL PEAVVXDGEM VLCKIHLSHS ACSKKARQRS AARRLSGTGS 180 QEQDQPAPMP EVTAKRPAPA ASDHDPPCPK RARVAAAEAD HGGEIDGFAS SLEDLVAEQY 240 EPAVEAAADN MMDPRFSCTM EELLGGAATD EEQQDATLLP AVEAEQLRGM VDFDFNLDDL 300 PVLDDDALGE IMLSLDDEAP MSLPALDDGD LVSLPAVETE QRGVDLPIAS DEGFDFELPT 360 GEELDAMISH LQENWPVSFA PDGDLVSFPG LPAVL*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MELDMEVFAL CRFDLTPLEA VAYFLPRLLS GETLHGAERF IHRADIYGQL EPKDLAAAFP  60
PANKADRTGA RFFFTLSKRQ KGSRSRSARS AGAGTWTIQK TIDINDEAGV KKGEEKKLSF  120
KSKKDKESSG WVMEEYRCLL PEAVVXDGEM VLCKIHLSHS ACSKKARQRS AARRLSGTGS  180
QEQDQPAPMP EVTAKRPAPA ASDHDPPCPK RARVAAAEAD HGGEIDGFAS SLEDLVAEQY  240
EPAVEAAADN MMDPRFSCTM EELLGGAATD EEQQDATLLP AVEAEQLRGM VDFDFNLDDL  300
PVLDDDALGE IMLSLDDEAP MSLPALDDGD LVSLPAVETE QRGVDLPIAS DEGFDFELPT  360
GEELDAMISH LQENWPVSFA PDGDLVSFPG LPAVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G275400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239527.1	1e-156	uncharacterized protein LOC104585199
TrEMBL	A0A0Q3HVP8	1e-155	A0A0Q3HVP8_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI4G43020.1	1e-155	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Brast05G275400.1.p