PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G265500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 274aa MW: 30454.9 Da PI: 7.7249 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.9 | 5.4e-30 | 36 | 139 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae++ ++++e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L +gD+v F+++ Brast05G265500.1.p 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPTEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLAAGDVVHFERV 126 99****************************98888889999************************************************88 PP SS..SEE..EEEE CS B3 86 gr..sefelvvkv 96 + ++ +l+++ Brast05G265500.1.p 127 RGlgTGDRLFIGC 139 6553444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 30 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.03E-28 | 33 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.56E-28 | 34 | 128 | No hit | No description |
Pfam | PF02362 | 3.4E-27 | 36 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-23 | 36 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 36 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MAMHPLSQGH PQAWPWGVAM YTNLHYHQQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDSP TEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLAAGDV 120 VHFERVRGLG TGDRLFIGCR SRGESAPAAV APPPPVRVLP PALNAGEQQP WSPMCYSTSG 180 SYPTSPANSY AYRRSVEQDH SDMLHAGESQ RDTDAKSSST ASAPPSRRLR LFGVNLDCGP 240 EPEAEAPTTP MYGYTNHSPY AAVATVPNYW GSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-48 | 31 | 142 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-48 | 31 | 142 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G265500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578891.1 | 0.0 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 1e-130 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | I1IU87 | 1e-180 | I1IU87_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G42167.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 3e-53 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G265500.1.p |
Publications ? help Back to Top | |||
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