PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G262500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 829aa    MW: 95311.6 Da    PI: 4.9084
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G262500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.84.3e-2495181290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Brast05G262500.1.p  95 LYCDYGHRMGFSVRKGKQYYFTGTKIIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDNEGQWRVIQIIPEHNHELV 181
                         69****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2195181IPR004330FAR1 DNA binding domain
PfamPF105516.7E-31293387IPR018289MULE transposase domain
PROSITE profilePS5096610.039576612IPR007527Zinc finger, SWIM-type
PfamPF044342.7E-4578608IPR007527Zinc finger, SWIM-type
SMARTSM005758.6E-5587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MEGASNAMEV DADVICLDNV DDSEQEAQEN GEVQIICDAE NEGQVAFDSR EQGQDEHFVR  60
DEEDQENNAV TRNHEEFTEE LRTKVVYSEE HAYMLYCDYG HRMGFSVRKG KQYYFTGTKI  120
IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDNEGQWRVI QIIPEHNHEL  180
VTPGEIHLLR SVRTRSIPKP SALNAMVNAE MQAMHDSLHV NDDGTECHSQ LSIQSYTLFE  240
SEDAQALVGY LKRKTIEQGM FYWDVQVDQE GQMTNFFWRD GRSRVDYDCF GDVVVFDTAF  300
RTNKYNMVCA PFVGINHHMQ NVMFGCAFML DESLTSYEWL LKSFLDSMGG SPPKTILTDQ  360
NDTISNAVEV IFPETRHCFC PWHIEKNLQS HLDTLNASGT FYSIFMKCMN DCESEAEFEE  420
TWAMMLHDNN LQGDQWLIDQ FEQRHKWCTA LLMDTFDGGI KSLDRSLSSH NVLSSIADES  480
ISPTNFVLEF DKLVGSWRTN ESLEDIQCNQ SPPEYTVKHN SVLQHAAEVY THKVYKSLET  540
EFLDGCTDTS YSYQEMRCSE TLYRFEFISQ SGSKVWIVSL DTSTMELNCS CKKFETMGIQ  600
CRHAVNALSL KNLDKIPERY VLKRWTKYVR KGTYLFPTDE FPEQDCAAAE LAYRNRTMLF  660
VYDLLMKSKG HQDTRKLIID VLENGERSLE SVCELKRMHM HPSGKDKDGN KADKRKKKLT  720
KQDKSSRNVK QAVLPQPDHS VFIDQPNQNE YFATEDIATN SSIGRPFFYQ EYPATSSVST  780
SQIQGHATMH SVPQCAPAPQ PQHTAQSIIL HRHSVVEEIS KECSTIDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G262500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578884.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3LHR90.0A0A0Q3LHR9_BRADI; Uncharacterized protein
STRINGBRADI4G41960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-85FAR1-related sequence 5