PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G256800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 482aa MW: 52186.7 Da PI: 6.2288 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 238 | 259 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H++ H Brast05G256800.2.p 238 FCAICGKGFKRDANLRMHMKGH 259 6*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.31E-5 | 236 | 261 | No hit | No description |
SMART | SM00355 | 0.015 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 237 | 264 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-5 | 238 | 290 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 79 | 288 | 321 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 43 | 326 | 348 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MNHSKNLIQE ESADLSSNPL YYKLSSENPM LGTGIQQPFP PFTSPFGDAS STSVPHMDWN 60 PGTMFDNLTF IEEKIRQVKD VIRSMVVNGG QLSAQPGEFV QQQQQQVNAD LTCLIVQLIS 120 TAGSLLPSLK NSSFLSHPPA GQIPNVVDTS SRSVVPNAAF SEEHKEEMHS PDYEELFKGL 180 TDGAVEGIDI DAVLVEKNDV KDGDEGSGAG IDGDILPAGS YELLQLEKDE ILAPHTHFCA 240 ICGKGFKRDA NLRMHMKGHG DEYKSPAALA KPPRDESTDH AAAVVKRYSC PFAGCKRNKL 300 HKSFLPLKTI LCVKNHYKRS HCEKSYTCSR CHAKKFSIMA DLKTHEKHCG QVKWLCSCGT 360 TFSRKDKLFS HVGLFKGHTP SLPAEEPEAS GQVGCAGSRP EPAKVESSMG SSSMWGNFSG 420 NGDAMLGVNG LDGCSDDFLS TPNFGSFGFG QFDGFPEAPS EASLAMLPSD LYRNGEKNGK 480 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G256800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809367.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger protein STAR3-like | ||||
Swissprot | Q2QX40 | 1e-138 | ART1_ORYSJ; Zinc finger protein STAR3 | ||||
TrEMBL | T2HFU2 | 0.0 | T2HFU2_HOLLA; Aluminum resistance transcription factor 1 | ||||
STRING | Pavir.Cb01989.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-127 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G256800.2.p |