PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G253800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 279aa    MW: 29496.1 Da    PI: 9.2027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G253800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l+  +k +G g+W++ ++  g+ R++k+c++rw +yl
  Brast05G253800.1.p 14 KGAWTKEEDERLIAHIKNHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61
                        79********************************************97 PP
2Myb_DNA-binding47.25.2e-1567111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +T++Ed+ ++++++  G++ W+ Ia +++ gRt++++k++w+++
  Brast05G253800.1.p  67 RGHFTEQEDDVIIRLHQAIGNK-WSMIAGKLP-GRTDNEIKNYWNTH 111
                         899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.294961IPR017930Myb domain
SuperFamilySSF466891.46E-2913108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002499.2E-151461IPR001005SANT/Myb domain
CDDcd001671.41E-111661No hitNo description
PROSITE profilePS5129425.02762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2765116IPR009057Homeodomain-like
SMARTSM007176.9E-1466114IPR001005SANT/Myb domain
PfamPF002496.1E-1367111IPR001005SANT/Myb domain
CDDcd001672.72E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIK NHGEGCWRSL PKAAGLQRCG KSCRLRWINY  60
LRPDLKRGHF TEQEDDVIIR LHQAIGNKWS MIAGKLPGRT DNEIKNYWNT HVKRKLLARG  120
IDPITHLPLN AAAGPPSAAR RRYAYAPVPA AGGSMSGSRS RDAASSEDDD SGTGSLGISL  180
DLNLSISPPC VQPQPASSSS SPSPPPPPAR GVVSMDGGQS SGYFSSGVCV CLDRLGFQGS  240
GEPCSFCNGG ASSSSSSSMR PAASSGVFRF VNASLQGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G253800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0630271e-116AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578854.11e-131transcription factor MYB8
SwissprotP813933e-84MYB08_ANTMA; Myb-related protein 308
TrEMBLI1ITY51e-130I1ITY5_BRADI; Uncharacterized protein
STRINGBRADI4G41277.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-81myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]