PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G244100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28107.1 Da PI: 9.6659 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.6 | 1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Brast05G244100.1.p 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 100.3 | 2.6e-33 | 85 | 175 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e + ++++qqe+akL+ +i++Lq++++hl+G++++ LslkeL+qLe++Lek++ kiR++K+ell +i+++ k+e elq++n++Lr+k++e Brast05G244100.1.p 85 EVNAQQYYQQEAAKLRHQIQMLQNTNKHLVGDSVGHLSLKELKQLESRLEKGIAKIRARKTELLAGEINYMAKREMELQSDNMDLRTKIAE 175 567789**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.26E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.62E-45 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 5.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.0E-26 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.679 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048283 | Biological Process | indeterminate inflorescence morphogenesis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 SVKATIDRYK KAHACGSTSG APLIEVNAQQ YYQQEAAKLR HQIQMLQNTN KHLVGDSVGH 120 LSLKELKQLE SRLEKGIAKI RARKTELLAG EINYMAKREM ELQSDNMDLR TKIAEGEQQL 180 QQVTIARPAA VPDQLNPFAA LDMKCFFPAN LFDAAVHAQA QAQAQAQAQA SLQLNLGYQL 240 APPGAGDQAH HF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-19 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G244100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ588322 | 0.0 | HQ588322.1 Brachypodium distachyon MADS-box transcription factor (MADS2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578791.1 | 1e-168 | uncharacterized protein LOC100836399 isoform X2 | ||||
Swissprot | Q2QW53 | 1e-135 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
TrEMBL | I1ITN0 | 1e-167 | I1ITN0_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G40350.1 | 1e-168 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 7e-87 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G244100.1.p |