PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G228500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 1423aa MW: 158290 Da PI: 8.1471 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 1303 | 1326 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++ Fs++ +L H r Brast05G228500.1.p 1303 FSCDieGCDMFFSTQQDLLLHKRD 1326 899999***************985 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 1357 | 1380 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 kC+ dC+k+F+ + + H+r+H Brast05G228500.1.p 1357 KCTfkDCKKTFKWPWAKTEHMRVH 1380 79999*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 6.4E-16 | 17 | 58 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.55 | 18 | 59 | IPR003349 | JmjN domain |
Pfam | PF02375 | 8.4E-13 | 19 | 52 | IPR003349 | JmjN domain |
PROSITE profile | PS51184 | 33.633 | 184 | 353 | IPR003347 | JmjC domain |
SMART | SM00558 | 9.9E-43 | 184 | 353 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 1.48E-23 | 198 | 372 | No hit | No description |
Pfam | PF02373 | 2.3E-35 | 217 | 336 | IPR003347 | JmjC domain |
SMART | SM00355 | 14 | 1303 | 1325 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 1326 | 1355 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 15 | 1326 | 1350 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1328 | 1350 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.91E-14 | 1337 | 1393 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.4E-10 | 1353 | 1381 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.466 | 1356 | 1385 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.001 | 1356 | 1380 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1358 | 1380 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-9 | 1382 | 1409 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 1386 | 1417 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 1386 | 1412 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1388 | 1412 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1423 aa Download sequence Send to blast |
MSLPPVDPPE WLRTLPEAPE YRPTLAEFVD PIAYILKIER DASRYGICKI VPPLPAPSRE 60 ATVQRLKASF ASNAAATAPG DASPTFPTRL QQVGLSTKNR RGANRRVWES GERYTLEAFR 120 SKARDMELPR HATPPKHATP LQLEALFWGA CAARPFNVEY GNDMPGSGFA EPEDTGDAAA 180 APRDVGDTDW NMRVAPRARG SLLRAMSRDV AGVTSPMLYV AMLYSWFAWH VEDHELHSLN 240 YLHFGKPKTW YGVPRDAMLA FEDTVRVYGY GDDLNAIMAF QTLNQKTTVL SPAVLLSAGV 300 PCCRLVQNPG EFVITFPGAY HSGFSHGFNC GEATNIATPL WLLVAKEAAI RRASTNCGPM 360 VSHYQLLYKL ALSLRQREPK DFHTIPRSSR LRDKKKKDEA DIIVKEKFVG NVVENNNLLS 420 ILLDKTSCII VPEIAFPRPF FSKMMVPEVI VKQSLAAGHC SVSRQAVENM SVDVALDNIK 480 GVDNVSGPQS VTEASFYACN RKLYETKYGE PDTAALGLST PEMQNGVTDK HRSHREGGLL 540 DHGRLPCVQC GILSFACVAI IQPREAAVQF VMSREGISSS AKVGELSNLD SISNWISGNH 600 GIVPPQGQAS GAHSVNLAQV SDHCRQLYDR NTNGCTSALG LLASMYESSD SEEEKSDDVS 660 TDSEKHAAAN QGKDIQFLGT SDSCPNTVQH ERANLHLYEE GCETRNTASL MKPIKHNSRP 720 VTWSSRDTDI GHFARLGEPG TSYEQCSVYH DLVDDLTVSG VKASPDTCVS RAKSSIESDM 780 LTMLKYNKDS CRMHVFCLEH ALETWTQLQE IGGANVMLLC HPEYPRAESA AKLIAEELGL 840 KHDWKDITFG EATKDDIRRI QLALQDEDAE PASSDWAVKM GINIYYSAKQ SKSPLYSKQI 900 PYNSIIYEAF GQENPDTLTD YGEQRSGATK KRVVGWWCGK AWMSNQAHPL LARSKAMFAA 960 KSHDKVQDEP STLSNIMISR SPSKRISRKK RGDSMEKSGA EKKRCSATDD TALHGGSLGT 1020 NTETISDQSE NFNVHDKHEG DEIEEAPSTQ QYQQHKLQNV DMNLSSKKQK SDKRNSNLNE 1080 ICDEDNDVDR WLNIDAGDNA AIGNLDNSPQ GLDDAKAKSP GKLQGSKRKS SKGKASDDSL 1140 NGVKKLQKVN KKSISRKQNN GRLHDVESGV EATTGNLDNS QQPRLEAVKL KSVGKSQSCK 1200 RKSSKGKTNE DPPDGDKKLQ VVNTKSSSRK QKVDSINRQF CEGPDEDNPM DYVPKDEDEA 1260 TRDNCHKVSE EQTDDVKVKS RLKTQTVKKK TSKRQAGDKE AKFSCDIEGC DMFFSTQQDL 1320 LLHKRDICPV KGCKKKFFCH KYLLQHRKVH MDERPLKCTF KDCKKTFKWP WAKTEHMRVH 1380 TGDRPYKCKE PGCTQTFRFV SDFSRHKRKT GHSNDKRNKE ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 8e-71 | 7 | 374 | 4 | 353 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 8e-71 | 7 | 374 | 4 | 353 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 391 | 397 | RDKKKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G228500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238558.1 | 0.0 | lysine-specific demethylase JMJ705 | ||||
Swissprot | Q5N712 | 1e-164 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A0Q3PQC4 | 0.0 | A0A0Q3PQC4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G39130.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6718 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 1e-155 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G228500.1.p |
Publications ? help Back to Top | |||
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