PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G222500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 678aa    MW: 75238.8 Da    PI: 5.032
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G222500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822119.35.4e-37491718127
              DUF822   8 twkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq. 95 
                           +E+E++k+RERrRRai+ +i+aGLR++Gny l++raD+neV++AL+r+AGwvv +DGtt++  s+ +  + a  a  sa   p ss + 
  Brast05G222500.1.p  49 AREEKERTKLRERRRRAITGRILAGLRRHGNYSLRVRADINEVVAALARDAGWVVLPDGTTFPSPSSSQapRPAMLAPVSAAPPPISSASa 139
                         5689**********************************************************95444443356667777888888888776 PP

              DUF822  96 sslkssalaspvesysaspksssfpspsslds 127
                         +++    + sp+++   s ++ ++ +  s++ 
  Brast05G222500.1.p 140 LAPPLRGIVSPLAARPISRRAAATVAGPSYSA 171
                         88888888888888777777666666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.7E-3449185IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.83E-191234672IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-207237671IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.5E-115243662IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76274288IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76295313IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76317338IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060321329IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008422.3E-6400409IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007509.9E-76410432IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76483502IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76517533IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76534545IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76552575IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-76592614IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.3E-6643657IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.3E-6658672IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLRLDPGGGQ DEGMGIKEED DDEEEEDEED YLVMEQAEEQ QQRQRGGRAR EEKERTKLRE  60
RRRRAITGRI LAGLRRHGNY SLRVRADINE VVAALARDAG WVVLPDGTTF PSPSSSQAPR  120
PAMLAPVSAA PPPISSASAL APPLRGIVSP LAARPISRRA AATVAGPSYS ALRSCSSLAS  180
PPRARAVPED DASPLLAVPV PDDHGMGTQD GDAGKQATTA VVAVAPPRLP ERDFAGTPYV  240
PVYVMLPLGV VNVSGEVVDA DELVGQLRVL KAAGVDGVMV DCWWGNVEAQ RPQEYNWTGY  300
KRLFQMIREL KLKLQVVMSF HECGGNVGDD VSIPLPEWVI EIGRSNPDIY FTDREGRRNT  360
ECLSWGIDKE RVLQGRTAVE VYFDFMRSFR VAFDEYFEDG IISEIEVGLG ACGELRYPSY  420
AANHGWKYPG IGEFQCYDRY LQKNLRKAAE ARGHTIWARS PDNAGHYNSE PNNTGFFCDG  480
GDYDSYYGRF FLNWYSQVLL DHADRVLMLA RLAFEGSAIA VKVSGIHWWY KTASHAAELT  540
AGFYNPCNRD GYAPIVTVLK KYGAALNFTC VELRTMAQHE VFPEALADPE GLVWQVLNAA  600
WDAGIPVASE NALPCYDRDG FNKTLENAKP RNDPDGRHLF GFTYLRLCSV LFEKPNFMEF  660
ERFVKRMHGE AVLDLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-16123967011444BETA-AMYLASE
1bya_A1e-16123967011444BETA-AMYLASE
1byb_A1e-16123967011444BETA-AMYLASE
1byc_A1e-16123967011444BETA-AMYLASE
1byd_A1e-16123967011444BETA-AMYLASE
1q6c_A1e-16123967011444beta-amylase
1wdp_A1e-16123967011444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G222500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576871.10.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0Q3HDR70.0A0A0Q3HDR7_BRADI; Beta-amylase
STRINGBRADI4G38630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]