PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G221200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 176aa MW: 18923.1 Da PI: 4.7046 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45.5 | 1.8e-14 | 68 | 137 | 26 | 95 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + kda e + fi ++++ a+d c++ kr+tin++d++ al ++ f ++vepl++ l+++r+ ++ Brast05G221200.1.p 68 IVNKDAMAAFAESARIFIHYLSATANDVCKEAKRQTINAEDVFKALDEIEFTEFVEPLRTSLEEFRNKNA 137 57899*************************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.6E-31 | 38 | 174 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-9 | 40 | 113 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 7.16E-25 | 41 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAGETKEPQA ASQGESSKSA APASAPAPAA AAMPEAEVEE LPKTIVRRLV KDKLAQIAGS 60 DEGGADVIVN KDAMAAFAES ARIFIHYLSA TANDVCKEAK RQTINAEDVF KALDEIEFTE 120 FVEPLRTSLE EFRNKNAARR PATGKKPAEK RRKLDKEVPP KDQNNAADDA KEDED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G221200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238535.1 | 1e-100 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | I1IT16 | 2e-99 | I1IT16_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G38527.1 | 1e-100 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 5e-35 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G221200.1.p |