PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G214200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 486aa    MW: 54990.6 Da    PI: 8.4309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G214200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-1416103399
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++  +d++k + +v+p   ++++ggk   s t++le ++g+  +v++   k  +r+vl++GW+ Fv+ n+++e+ +++F+++g+s+   +
  Brast05G214200.2.p  16 AQM--HDNFKDS-MVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVRV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRRIGTSCL--K 97 
                         555..6666666.****9999777888..6779***************..********************************999999..9 PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v++f++
  Brast05G214200.2.p  98 VTIFDA 103
                         999986 PP
2B3322.3e-10219308393
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sef 90 
                          ++++s+v+    lv+pk++a+++   k++s+tl+l  e++  W  ++++r + g+++      +Fv++n+++egD ++F+ + g   ++f
  Brast05G214200.2.p 219 VKMKKSNVNLYPKLVIPKDYARAYFPHKNQSVTLKLP-EKSMDWLCRFCIRPGEGHHL-Y--LCKFVHDNHVREGDLCLFQPMtGVkaTKF 305
                         5788899999999***********7677788777744.57899*****8888887754.3..479****************5423212444 PP

                         ..E CS
                  B3  91 elv 93 
                         ++ 
  Brast05G214200.2.p 306 TFI 308
                         444 PP
3B342.21.4e-133494291795
                         E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEE CS
                  B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvk 95 
                         v++k +a +h  +  es+t+tl+ + g ++W  ++ +r + ++yvl + WkeFv++n+L+e D ++++   +g+ ++f+ +v+
  Brast05G214200.2.p 349 VISKGYAIAHFPN--ESQTITLQLPGGkKKWHPRFYIRPGNSGYVLHGQWKEFVRDNRLREEDLCLLQpiIKGKgRRFTVMVH 429
                         8999999999744..7789*****99989******77999999*************************533344455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.33411104IPR003340B3 DNA binding domain
CDDcd100171.32E-1514102No hitNo description
SMARTSM010192.0E-514104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1716104IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-1316103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1717105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-13209298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13211311IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-12215313No hitNo description
PROSITE profilePS508636.611217315IPR003340B3 DNA binding domain
SMARTSM010190.0024217311IPR003340B3 DNA binding domain
PfamPF023624.9E-9219313IPR003340B3 DNA binding domain
SMARTSM010195.3E-4333434IPR003340B3 DNA binding domain
PROSITE profilePS508639.234333434IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14349419IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-11349430IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-15349430IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-17349429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSNPCECCKS KVKFIAQMHD NFKDSMVIPE WIVNHFGGKI SGTIKLEAPN GQIHDVRVAK  60
EMNRTVLQSG WEAFVDVNQI QENFSLMFRR IGTSCLKVTI FDANGEERIS CCAGMKKPTY  120
VEKKSTNCAD ISSNSHDGTA QSSDSDGHCR EQGKKPAVES SCDEFSDDSP SESESMESDD  180
LRLSKYYVLS ARCYLTKEQE DEINAFLRKI QPEIPLLVVK MKKSNVNLYP KLVIPKDYAR  240
AYFPHKNQSV TLKLPEKSMD WLCRFCIRPG EGHHLYLCKF VHDNHVREGD LCLFQPMTGV  300
KATKFTFIFH LLSRAGKAGI DSNHGHQETS SKIHYILSGR CQLDEEDEVI SKGYAIAHFP  360
NESQTITLQL PGGKKKWHPR FYIRPGNSGY VLHGQWKEFV RDNRLREEDL CLLQPIIKGK  420
GRRFTVMVHL LPKARSTSIS KDRDGVLGSN SDGTETPDDS NIPGYVLLGS SSRLTSARRT  480
LWQRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G214200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT070.0A0A2K2CT07_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-12B3 family protein