PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G214200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 519aa MW: 58731.1 Da PI: 8.6031 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.4 | 2.9e-14 | 16 | 103 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ +d++k + +v+p ++++ggk s t++le ++g+ +v++ k +r+vl++GW+ Fv+ n+++e+ +++F+++g+s+ + Brast05G214200.1.p 16 AQM--HDNFKDS-MVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVRV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRRIGTSCL--K 97 555..6666666.****9999777888..6779***************..********************************999999..9 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Brast05G214200.1.p 98 VTIFDA 103 999986 PP | |||||||
2 | B3 | 31.8 | 2.5e-10 | 219 | 308 | 3 | 93 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sef 90 ++++s+v+ lv+pk++a+++ k++s+tl+l e++ W ++++r + g+++ +Fv++n+++egD ++F+ + g ++f Brast05G214200.1.p 219 VKMKKSNVNLYPKLVIPKDYARAYFPHKNQSVTLKLP-EKSMDWLCRFCIRPGEGHHL-Y--LCKFVHDNHVREGDLCLFQPMtGVkaTKF 305 5788899999999***********7677788777744.57899*****8888887754.3..479****************5423212444 PP ..E CS B3 91 elv 93 ++ Brast05G214200.1.p 306 TFI 308 444 PP | |||||||
3 | B3 | 48 | 2.2e-15 | 367 | 462 | 3 | 95 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.S CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.s 88 + +s+v+++ + lv++k +a +h + es+t+tl+ + g ++W ++ +r + ++yvl + WkeFv++n+L+e D ++++ +g+ + Brast05G214200.1.p 367 VRMFKSNVNRQnAYLVISKGYAIAHFPN--ESQTITLQLPGGkKKWHPRFYIRPGNSGYVLHGQWKEFVRDNRLREEDLCLLQpiIKGKgR 455 556677777664789**********855..7789*****99989******77999999*************************53334445 PP EE..EEE CS B3 89 efelvvk 95 +f+ +v+ Brast05G214200.1.p 456 RFTVMVH 462 5555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.334 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.54E-15 | 14 | 102 | No hit | No description |
SMART | SM01019 | 2.0E-5 | 14 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-17 | 16 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.4E-13 | 16 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 17 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-13 | 209 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-13 | 210 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.27E-12 | 215 | 313 | No hit | No description |
SMART | SM01019 | 0.0024 | 217 | 311 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.611 | 217 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-9 | 219 | 313 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 356 | 452 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-21 | 359 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.73E-21 | 363 | 462 | No hit | No description |
SMART | SM01019 | 8.7E-9 | 365 | 467 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-13 | 365 | 463 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.743 | 366 | 467 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MSNPCECCKS KVKFIAQMHD NFKDSMVIPE WIVNHFGGKI SGTIKLEAPN GQIHDVRVAK 60 EMNRTVLQSG WEAFVDVNQI QENFSLMFRR IGTSCLKVTI FDANGEERIS CCAGMKKPTY 120 VEKKSTNCAD ISSNSHDGTA QSSDSDGHCR EQGKKPAVES SCDEFSDDSP SESESMESDD 180 LRLSKYYVLS ARCYLTKEQE DEINAFLRKI QPEIPLLVVK MKKSNVNLYP KLVIPKDYAR 240 AYFPHKNQSV TLKLPEKSMD WLCRFCIRPG EGHHLYLCKF VHDNHVREGD LCLFQPMTGV 300 KATKFTFIFH LLSRAGKAGI DSNHGHQETS SKIHYILSGR CQLDEEDEVG IEALVAKIQP 360 EIPLFVVRMF KSNVNRQNAY LVISKGYAIA HFPNESQTIT LQLPGGKKKW HPRFYIRPGN 420 SGYVLHGQWK EFVRDNRLRE EDLCLLQPII KGKGRRFTVM VHLLPKARST SISKDRDGVL 480 GSNSDGTETP DDSNIPGYVL LGSSSRLTSA RRTLWQRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G214200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318791.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X1 | ||||
TrEMBL | A0A2K2CT07 | 0.0 | A0A2K2CT07_BRADI; Uncharacterized protein | ||||
STRING | EMT18170 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G214200.1.p |