PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G196100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36316.7 Da PI: 9.9716 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 97 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++k +G g+W++ ++ g+ R++k+c++rw +yl Brast05G196100.1.p 97 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 144 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 150 | 194 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Brast05G196100.1.p 150 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 194 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 88 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.407 | 92 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 96 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-13 | 96 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 97 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-10 | 99 | 144 | No hit | No description |
PROSITE profile | PS51294 | 28.969 | 145 | 199 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 148 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-17 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-17 | 150 | 194 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.30E-13 | 152 | 195 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:1903086 | Biological Process | negative regulation of sinapate ester biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MTWGRGRPTS LTFFSPTQPL EDLPQSSQVP IKSSPFFHPP CAVPARNNNF HCNPPPRTEE 60 SIGKRGGSAR KGKRHRRQLI KSVMGRSPCC EKAHTNKGAW TKEEDDRLTA YIKAHGEGCW 120 RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFSEEEDEL IIKLHSLLGN KWSLIAGRLP 180 GRTDNEIKNY WNTHIRRKLL SRGIDPVSHR PTNEHVSNVT ISFEAAREEK GAMFRLDEPK 240 PAIGHDPVDW GQGKPLKCPD LNLDLCISPP FQEDPMKPVK REAGVGVCFS CSLGLPRSSE 300 CKCSNFLGLR TAMLDFRSLE MK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 96 | 199 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00479 | DAP | Transfer from AT4G38620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G196100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679410 | 1e-155 | HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578527.1 | 1e-176 | myb-related protein Hv1 | ||||
Swissprot | P20026 | 1e-137 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | I1ISA0 | 1e-174 | I1ISA0_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G36460.1 | 1e-175 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-100 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G196100.1.p |