PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G194200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 890aa    MW: 98664.5 Da    PI: 5.6935
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G194200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.75.2e-05651711154
                         TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 
                         r+kRt +++ q++e e++     +++ +a++ +  A+kl     ++t +q k+W  Nr+ak
  Brast05G194200.1.p 651 RKKRTIMNDGQVNEIENALVDepEMHKNATSLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 711
                         89***************999834555577899****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-6629712IPR009057Homeodomain-like
PROSITE profilePS5007110.446648715IPR001356Homeobox domain
CDDcd000860.00913651714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MTETKMIDMV SAIEELSGLT SRELGEMLKE SESFVLQCKA EDGGSKQVDM EKLVLSLPLH  60
LLAVCLELGR GSDLTYVLRG IRFLHSLSEL ATRYTRLEQV LLDDVKLSEQ VLDLILFVLT  120
ILSHRKKENH LGASPLIHSS LVAASLHLLT SYFSSQCHEL VHILLAHSKV DIFMDVAFDS  180
LHEDMRLLSL RLSTLSTDAF PVGPFDSQLT HFICQQCEAS LQFLLLLCQQ KLFRDRILKN  240
KELCRNGGIL SLSLTILKLG VPERLQGSTH IVSSISRLKA KVLSIVLQLC EAESISYLDE  300
VATLPKSMQL GQTLALEVLD LLKAAFGRKE KPAAGSHDKS FPMGSVLISA LRLVDVFSDD  360
SNFRSSFITN TIPFLTQILA TPHDEFSSSW CSVNMPVMEE DANLEYDPFG AAELALVAAS  420
SMLTEAKANY SCPLRTISMP TITYAQTRTS YVVKIIANLH VFVPNICEEQ ERDLFLQKFQ  480
KYLLSESPRP SLDHPASDEA TTVCRNLGSL SRYAKSLIPN HLLNEEDVQL LSEFAYKLQT  540
WCGSSLAVLR TLQDAQNMEE STPTPSMTQD RNARDETPRN CTIINCGLLQ NSVGQNLIHL  600
GVARTTNTGY PGVSTATSIE LQHSRVVEHS KTPEPTKESG LQDDDERQRK RKKRTIMNDG  660
QVNEIENALV DEPEMHKNAT SLQAWAEKLS GQGSEITSSQ LKNWLNNRKA KLARIAKERG  720
VPSEGDNADK PSTPATSHFG DSSESAGEES YFPPPRVMNA LGISKGNGQL NQGTNDTTTQ  780
AEVNQNIMMS RPFTRSYSFE LGRPVLLIDN EGNEIGRGEI FQVEGMAQGK SLTESHICII  840
DITDLKIEKW RELPHPSEAS GRTFQEAESR HGGVMRVAWD VIRLAPVVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1648652RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G194200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318860.10.0nodulin homeobox isoform X3
TrEMBLA0A0Q3LEZ40.0A0A0Q3LEZ4_BRADI; Uncharacterized protein
STRINGBRADI4G36300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418