PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G193100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 314aa    MW: 33864.9 Da    PI: 6.3089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G193100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-114192148
                        TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l   + +  g     +W++++++ g+ R++k+c++rw +yl
  Brast05G193100.1.p 41 RGPWTAEEDKKLMGFILRSSGAggrcCWRAVPKMAGLLRCGKSCRLRWTNYL 92
                        89*************9999877899***********99************97 PP
2Myb_DNA-binding52.79.7e-17101142447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          T +E++l vd+++ lG++ W++Ia++++ gRt++++k++w+++
  Brast05G193100.1.p 101 LTHDEEQLVVDLHASLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 142
                         699****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-183294IPR009057Homeodomain-like
PROSITE profilePS500909.5243692IPR017877Myb-like domain
SuperFamilySSF466892.28E-2338139IPR009057Homeodomain-like
SMARTSM007177.6E-64094IPR001005SANT/Myb domain
PfamPF002494.2E-104192IPR001005SANT/Myb domain
CDDcd001676.22E-64392No hitNo description
PROSITE profilePS5129427.44493147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2495148IPR009057Homeodomain-like
SMARTSM007172.4E-1497145IPR001005SANT/Myb domain
PfamPF002492.2E-14101142IPR001005SANT/Myb domain
CDDcd001678.23E-12102143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRVLPAAHLP QAIASGRYIL ASTTTDRMGR QPCCDKLGVK RGPWTAEEDK KLMGFILRSS  60
GAGGRCCWRA VPKMAGLLRC GKSCRLRWTN YLRPDLKRGL LTHDEEQLVV DLHASLGNRW  120
SKIAAKLPGR TDNEIKNHWN THIKKKLIKM GIDPVTHQPL HGRRKQQQEE EGEQATTTSA  180
QSSTVSSSDK VMDVTSAGSG NSSLPESSSC TNTSSTATTG GGSHDQDPLV KWLLEDQEDD  240
LPTGGAIGEP WLDFTAGDDV DEFSSIAAAT PWDVGATDWL LDYQDFGVGG SSLLGDASMS  300
MSMVVDSSNG SNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25411477108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G193100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1060391e-130AK106039.1 Oryza sativa Japonica Group cDNA clone:001-206-D11, full insert sequence.
GenBankAK1117401e-130AK111740.1 Oryza sativa Japonica Group cDNA clone:J023047I22, full insert sequence.
GenBankAK1210231e-130AK121023.1 Oryza sativa Japonica Group cDNA clone:J023049M10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578505.11e-157protein ODORANT1
SwissprotQ50EX64e-87ODO1_PETHY; Protein ODORANT1
TrEMBLI1IS711e-155I1IS71_BRADI; Uncharacterized protein
STRINGBRADI4G36210.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.13e-81myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]