PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast05G187100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 23640.4 Da PI: 9.9577 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.2e-18 | 20 | 68 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI+d +r r +lg+f+tae+Aa a+++a+++l+g Brast05G187100.1.p 20 FLGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEDAASAYDEAARALRG 68 67******.7*********....4456*************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.5E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.75E-24 | 19 | 76 | No hit | No description |
PROSITE profile | PS51032 | 19.599 | 19 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 20 | 31 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-18 | 20 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-12 | 22 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MAAEGSGRPT ATVQCRGRRF LGVRQRPSGR WVAEIKDSAQ RVRLWLGTFD TAEDAASAYD 60 EAARALRGDS TRTNFAGASS SSPARARASK SLQHAMARAA AGRPSLASAC GGGDQFALAA 120 VFRHWHWQAP PEQRMPGADG ETVERVASAV QPSFVVPRRT EAPPPPAQSV APGAGDVWGA 180 RMGVLEMAAG SGGETDGDKS FKVSSSLIVP SKFGAAATEP FGLEEF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-14 | 15 | 75 | 1 | 62 | ATERF1 |
3gcc_A | 9e-14 | 15 | 75 | 1 | 62 | ATERF1 |
5wx9_A | 4e-13 | 19 | 75 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast05G187100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239429.1 | 1e-112 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A0Q3IYC4 | 1e-110 | A0A0Q3IYC4_BRADI; Uncharacterized protein | ||||
STRING | Si032213m | 1e-56 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast05G187100.1.p |