PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G186800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25612.7 Da PI: 4.7507 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.2 | 5.6e-15 | 43 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + grWv r+p g ++kr +lg++ tae Aa+a++aa+++l+g Brast05G186800.1.p 43 PVYRGVRLRGSAGRWV---RVP---GmRNKRLWLGTHLTAESAARAHDAAMLALRG 92 68**************...788...8788*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-10 | 43 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.753 | 44 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-12 | 44 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-12 | 44 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-19 | 44 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-17 | 45 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDGSDQWTNS TSSSSSLDPY MVVWSPPPKR PAGRTKFKET RHPVYRGVRL RGSAGRWVRV 60 PGMRNKRLWL GTHLTAESAA RAHDAAMLAL RGPSAAAAAG LLNFPDSAWL LSVTPPALVA 120 DLDEVQRAAL AAVADFQRRE ASTVPVVNEA ISSASAPSSD NGVSWATSQP SANNGTFEEP 180 VAIGSDMFEL CMPDEMDLGM YYKDLAEGLL MPPPLAPNTG VCWESGDYGD GGADAALWSY 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G186800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238395.1 | 1e-121 | dehydration-responsive element-binding protein 1H | ||||
TrEMBL | I1IRZ9 | 1e-119 | I1IRZ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G35620.1 | 1e-120 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-20 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G186800.1.p |