PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G186500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 254aa    MW: 27387.5 Da    PI: 4.7297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G186500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-184699156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        + y+GVr + + grWv+e+r+p +    kr +lg++ tae Aa+a++aa+++l+g+
  Brast05G186500.1.p 46 PVYRGVRHRGNAGRWVCEVRVPGT--SGKRLWLGTHLTAESAARAHDAAMLALHGP 99
                        68*******************944..34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-124698IPR001471AP2/ERF domain
PROSITE profilePS5103220.50847111IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1647112IPR016177DNA-binding domain
SMARTSM003802.0E-1647117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2447113IPR001471AP2/ERF domain
CDDcd000183.52E-2048113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMDGSDQRI TSPSSSSSHD QYGVVWSPPP PKRPAGRTKF KETRHPVYRG VRHRGNAGRW  60
VCEVRVPGTS GKRLWLGTHL TAESAARAHD AAMLALHGPS AAAAARLLNF PDSAWLLAVT  120
PSALADHDEI QRVAIAAVVD FQRREAAAVP VVNEPINRPA FAPLPDNAVS WASSQPSAAN  180
TGIFEEPVAV DSNMFELDMT SEMDRGMYYV DLAEGLLMEP PPPAPDTEPF WDSGDYDDGG  240
ADATLWSYQN DLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G186500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804700.0JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576749.11e-150dehydration-responsive element-binding protein 1H
TrEMBLH9C1H21e-148H9C1H2_BRADI; CBF3
STRINGBRADI4G35590.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-24C-repeat/DRE binding factor 2