PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G182100.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 378aa MW: 40626.4 Da PI: 7.1826

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G182100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1e-10	179	237	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+se+ Brast05G182100.2.p 179 KRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATTLSAQLALLQRDTTGLTSEN 237 9***********************************************99998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-17	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	177	240	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.2E-11	179	234	No hit	No description
SuperFamily	SSF57959	4.08E-11	179	234	No hit	No description
Pfam	PF00170	3.2E-9	179	237	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.04E-24	180	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MNKDKARISA DGGGDGLPPQ SSRRAGPSSS TTPPPEYDIS RMPDFPTRNP GHRRAHSEIL 60 SLPDDLDLSA PGGGDGPSLS DENDEELFSM FLDVDKLNSS CGASSEAESS SAAAGGGQAA 120 GMGHGMRPKH QHSQSMDESM SIKTEELVGP PGMDGMSSVE AKKAVSAAKL AELALVDPKR 180 AKRIWANRQS AARSKERKMR YIGELERKVQ TLQTEATTLS AQLALLQRDT TGLTSENSEL 240 KIRLQTMEQQ VHLQDALNDT LKTEVQRLKV ATGQLANGGG MMMNYGGMPQ APHQFGGNQQ 300 MFHNNQTMQS LLATHQLQQL QLHQQPQQQA LRPQHQQQPL HLLQAQQLQR DLKMKGPMGG 360 GQSLWGDGKS SGGSGGI*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MNKDKARISA DGGGDGLPPQ SSRRAGPSSS TTPPPEYDIS RMPDFPTRNP GHRRAHSEIL  60
SLPDDLDLSA PGGGDGPSLS DENDEELFSM FLDVDKLNSS CGASSEAESS SAAAGGGQAA  120
GMGHGMRPKH QHSQSMDESM SIKTEELVGP PGMDGMSSVE AKKAVSAAKL AELALVDPKR  180
AKRIWANRQS AARSKERKMR YIGELERKVQ TLQTEATTLS AQLALLQRDT TGLTSENSEL  240
KIRLQTMEQQ VHLQDALNDT LKTEVQRLKV ATGQLANGGG MMMNYGGMPQ APHQFGGNQQ  300
MFHNNQTMQS LLATHQLQQL QLHQQPQQQA LRPQHQQQPL HLLQAQQLQR DLKMKGPMGG  360
GQSLWGDGKS SGGSGGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G182100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356433	0.0	AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576732.1	0.0	transcription factor RF2a
Refseq	XP_014758763.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	1e-158	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	I1IRV2	0.0	I1IRV2_BRADI; Uncharacterized protein
STRING	BRADI4G35240.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	6e-56	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast05G182100.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]