PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G172000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 371aa    MW: 38927.4 Da    PI: 5.689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G172000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08185232455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i  ++  L++l+P +    +k   Ka +L + ++Y++sLq
  Brast05G172000.1.p 185 SHSLAERVRREKITIKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 232
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-16179251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-8179236No hitNo description
PROSITE profilePS5088814.488181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16181249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-5185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDGDYVASLL MGSSGLDFSV LGMDGGFLET LCGGGGGGVG FAERAAGMSG AVSGGQFGVA  60
EGSGAVSREG SSVSDPAWAS YARPDGANAK KRKAPAGGSG KGKEAAAAAC FGKVGEATGP  120
ESKKCKVEIG PVKPKVEEAA SDGSAGGERG RKQAKGKSSK SKPADDEPPR DYVHVRARRG  180
QATDSHSLAE RVRREKITIK MKMLQDLVPG CNKVIGKALM LDEIINYVQS LQQQVEFLSM  240
KLATVNPQLD FSTLSTLLHK DMNETFGPSA NSVFPLESAG GAFPFYDQAD IFQSFGSGSM  300
ENQCSLGLLD TVLPHATNPQ YAFHKQQQNF WEENLQNALH IDNEQSRGNG VSAPNVDGQL  360
QAADHTETEF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G172000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578371.10.0transcription factor BHLH089 isoform X1
TrEMBLI1IRH90.0I1IRH9_BRADI; Uncharacterized protein
STRINGBRADI4G34350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-53bHLH family protein