PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G163300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 403aa MW: 43454.6 Da PI: 8.4226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 239 | 258 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Brast05G163300.1.p 239 FSCPVCFKTFNRYNNMQMHM 258 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0013 | 325 | 345 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Brast05G163300.1.p 325 CRRCGKAFAVKGDWRTHEKNC 345 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.9E-6 | 239 | 258 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 239 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.24E-6 | 305 | 343 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-5 | 310 | 343 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 323 | 343 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MENNPYTTFL KNYHQQSTHR RPRYYSFPAT PAPAQAPPPP PLSAYSSLFF PPPQPSTPPP 60 AAPPSPPLRE ALPLLSLAPA ASSHGSTREQ RRRRRGPGSE DDDADQDEVP GPASSSSSNQ 120 RRAGARRLFA DLNSKAASDD DEDPMDVERR GSMAAAEGDV TVALRIGLPS AAAAADHLIS 180 GISPSAAAAA AASRDEEEEE DGGGGVAALG FASTAIGRLN KGQYWIPTPS QILIGPTQFS 240 CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR 300 AKPLKDFRTL QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK 360 RSLKDHARAF GRGHGALGGG GLDDDDDCGA VSDVEHDDGA GV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G163300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356814 | 0.0 | AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576670.1 | 1e-178 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-121 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0Q3HR76 | 1e-176 | A0A0Q3HR76_BRADI; Uncharacterized protein | ||||
STRING | Traes_5BL_6888AE9CB.1 | 1e-169 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-107 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G163300.1.p |
Publications ? help Back to Top | |||
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