PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G155500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 417aa    MW: 43557.4 Da    PI: 6.2912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G155500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09251299355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Brast05G155500.1.p 251 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 299
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17246316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-11246303No hitNo description
PROSITE profilePS5088815.65248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16249315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7251299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDMNESSEKG MEGNGSSGPG NGIPPVEWQS QFGGGGFSAQ QQHTHMMDSF AAAASGMWAA  60
ASQNMSALSD VSGMSRGHGP GFLAPVPGAF LPPPCLGGHF PVDSGFIERA ARSSCFAGPG  120
AFGGGGDQDM GGAFGGVSEG YLDHRSSDKA DPDIAGNQGV PSSEAAGGDC SSKGSDSKKR  180
RRPSEVMGAD QVQSSNVGAD SANESVHSKD KGEESSPATT TTGKSKGKGA KESSEKEDYI  240
HVRARRGQAT NSHSLAERLR REKISERMKL LQDLVPGCSK VTGKAVMLDE IINYVQSLQR  300
QVEFLSMKLA TVNPRLDLNI EGLLSKDLLR FPGVSSSSIG FSPEMMHPQL QLSQPGLMQG  360
GAAGMANQDV FRRIMQAQLG AKDGSQMSHA LNGSFSDHVA QMAYPSMGSS QDGFQM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G155500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627780.0AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578282.10.0transcription factor bHLH49
RefseqXP_010238258.10.0transcription factor bHLH49
SwissprotQ9CAA98e-70BH049_ARATH; Transcription factor bHLH49
TrEMBLI1IR010.0I1IR01_BRADI; Uncharacterized protein
STRINGBRADI4G32934.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]