PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G146600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 297aa    MW: 32359.6 Da    PI: 9.4422
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32281192102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++e+++++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++
  Brast05G146600.1.p  28 FLTKTHQMVEERATDEVISWGEEGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQS 109
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+ i+r+k 
  Brast05G146600.1.p 110 LLSGIRRRKA 119
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-5324117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3224117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-172851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-177991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGAAAAQQK GGGGRGSAGS GGGGPAPFLT KTHQMVEERA TDEVISWGEE GRSFVVWKPV  60
ELARDLLPLH FKHCNFSSFV RQLNTYGFRK VVPDRWEFAN ENFRRGEQSL LSGIRRRKAA  120
TTTPQPSKSC GSGGVNVAFP PPLLHLPVPP ASASTSGNDH SSSSASSSPS RHPDLTGENE  180
RLRKDNHTLA VELALARRRC EELLGFLSHF LDVRQLDLRL LMHDEDMMQA AVARERCQEQ  240
QGCEEKNVKL FGVLLKDATT RKRARCDEAA ASERSSIKMI RIGEPWVGVP PAGPAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2031171129Heat shock factor protein 1
5d5v_B4e-2031171129Heat shock factor protein 1
5d5v_D4e-2031171129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G146600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578229.11e-155heat stress transcription factor B-1
SwissprotQ67TP91e-124HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLI1IQQ91e-154I1IQQ9_BRADI; Uncharacterized protein
STRINGBRADI4G32130.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-45heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]