PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G143800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 444aa    MW: 47149.2 Da    PI: 9.9154
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.94.8e-31194291297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         +++rlws  De+v+L+Gl +++ak g+   +++di ++++ +++++s+kvs++ql++K+rrLK+K++  v++ak+g++++f ++hd++i+e
  Brast05G143800.1.p 194 RPSRLWSPGDELVILRGLATYRAKSGVlpGSTNDIGKLHRHIRGQLSVKVSTTQLSDKVRRLKQKYQVLVTRAKNGRDQDFPTPHDHSIYE 284
                         679************************877888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         ++kk+Wg
  Brast05G143800.1.p 285 HAKKVWG 291
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-27196291IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAPKRPAAAA AASGSASDAS DAEGDRRHHP SDTDPSKTPP PNPNPKSSAA PSPNPASASV  60
AADSAAAGSD SGGAYDSDAE ARRRPAPRAA SPKLSGGGKP KPRSPGINSD SEDSALPAAS  120
DADLDPAAGV DSDDDNASPL RPARHSRSEA AIIKPISSRP MDPPRRGGAP ASEPRVKRPR  180
SAAVVAPTPE QMKRPSRLWS PGDELVILRG LATYRAKSGV LPGSTNDIGK LHRHIRGQLS  240
VKVSTTQLSD KVRRLKQKYQ VLVTRAKNGR DQDFPTPHDH SIYEHAKKVW GARIGDGGGA  300
GSENAAGGDS EEVQDSGDSD QDMESGRDDR DRSKNRKLRP VTMANGNGIG LGAVNANGKG  360
KSEFEKGKDA YPYLWETVEE LSREHPSGAA FKKAFEVLEG SKAHVMEEKL RKFRLTEIRQ  420
QLRRMDLMKE TVKMVLDTLE STD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578208.10.0STOREKEEPER protein
TrEMBLI1IQM50.0I1IQM5_BRADI; Uncharacterized protein
STRINGBRADI4G31840.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-16DNA-binding storekeeper protein-related transcriptional regulator