PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G143100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 484aa    MW: 51569.9 Da    PI: 8.4584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G143100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-066284123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Brast05G143100.1.p 62 YVCEICNQGFQRDQNLQMHRRRH 84
                        9*********************9 PP
2zf-C2H211.70.00082141162223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C  C+k +  +s++k H++t+
  Brast05G143100.1.p 141 ACARCSKAYAVHSDYKAHLKTC 162
                         6*******************98 PP
3zf-C2H210.80.0015170188523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr +++  H+ t+
  Brast05G143100.1.p 170 DCGRVFSRVESFIEHQDTC 188
                         9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-55985No hitNo description
Gene3DG3DSA:3.30.160.602.0E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355110104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-4131161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLGPSAGAGP PPEEDMPEPF GSLQIATTSA ATKRKRRPAG TPDPDAEVVS LSPRTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREAGEAAR KRVFVCPEPS CLHHDPSHAL  120
GDLVGIKKHF RRKHSGHRQW ACARCSKAYA VHSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDTCNA GCPQAAAGSD VPATACGVVA AAGSSLQQQQ VPPAVSLSRT ASSTSPSSDI  240
VISPVPWPSG GAGPMTAAAA FHRFDQAPSP PDARGGGNNL ELQLMPPSSG GTAGPAAPPH  300
SPSLTGDDAA MRLQLTMGFF CSGDNGGEFR PLSRDDAAHA RAKQEAAREE LRQAMAEKAA  360
ADEARAQARR QGELAEQELA SARRMRQQAQ VELSRAHALR EHAVRQVSAT LLQITCLGCR  420
QKFRAAATPA PAAAMSAEQQ LACSYVSSSV VTEGGDAETG NVDDQPLNLG GFRRRQHARM  480
DAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17136201368Zinc finger protein JACKDAW
5b3h_F3e-17136201368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G143100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238230.20.0protein indeterminate-domain 16
SwissprotQ9C9X71e-125IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0Q3ESJ60.0A0A0Q3ESJ6_BRADI; Uncharacterized protein
STRINGBRADI4G31770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-107indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]