PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G132900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 361aa    MW: 39093.6 Da    PI: 8.651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G132900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-1473121148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W +eEd  l  +v+ +G+  +W + +r++g++R++k+c++rw++yl
  Brast05G132900.1.p  73 KGPWAAEEDAVLRAYVAAHGTAgNWIALPRKIGLNRCGKSCRLRWLNYL 121
                         79******************99*************************97 PP
2Myb_DNA-binding409.3e-13128170246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T eEd l+  +    G++ W+tIa  ++ gRt++++k++w++
  Brast05G132900.1.p 128 GGFTDEEDRLICSLYVSIGSR-WSTIAGQLP-GRTDNDVKNYWNT 170
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8868121IPR017930Myb domain
SuperFamilySSF466892.57E-2570168IPR009057Homeodomain-like
SMARTSM007174.4E-1072123IPR001005SANT/Myb domain
PfamPF002496.6E-1273121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2374128IPR009057Homeodomain-like
CDDcd001672.26E-775121No hitNo description
PROSITE profilePS5129420.575122176IPR017930Myb domain
SMARTSM007171.9E-10126174IPR001005SANT/Myb domain
PfamPF002491.7E-10128170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-22129176IPR009057Homeodomain-like
CDDcd001676.27E-8130172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTVLYSSHGT SSSISQRRRL SAQLLQQTTA VTLQSPQASY IANSQRPASE PKGARDDDAM  60
GRAPCCDKAS VKKGPWAAEE DAVLRAYVAA HGTAGNWIAL PRKIGLNRCG KSCRLRWLNY  120
LRPNIRHGGF TDEEDRLICS LYVSIGSRWS TIAGQLPGRT DNDVKNYWNT KLKRRLLGAG  180
RRPLRYAPQP RLLPAIPAAY SAVERMQLSV QLQETPGFIT FHSNLATPPW TSPSPRSIQQ  240
QPVSPNTGYK AGFWSHFQTG SRVSVTDDHQ RAWGDSSGGA TPLSSSTTTG ETAAGIDSSS  300
STPTASTAAF GCEMDDEIEM LLQQIRGLEE NDGSAGSWSS ACSTPGVDSV FQDYVPDHNM  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24731767108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G132900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632601e-120BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318966.10.0transcription factor RAX3
TrEMBLA0A0Q3LCQ90.0A0A0Q3LCQ9_BRADI; Uncharacterized protein
STRINGTraes_5BL_C1D4586B1.21e-134(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-67myb domain protein 87