PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G132500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20788.9 Da PI: 6.6179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.2e-07 | 57 | 118 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 ++W++ Ede lv a ++ Wk I+++ + + +++ qck++w k Brast05G132500.1.p 57 KNWSKKEDEWLVSAWLNNSNDpidgnskmsdhFWKQISQEYNmhapqeQQKSAMQCKNHWTK 118 58**********************************************99**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 55 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.713 | 58 | 120 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00156 | 58 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAFFGVAGGS GCRHEDNSPV RGSGTPVSAA YRVEDPANNE EGSESNPVEH VKRGKGKNWS 60 KKEDEWLVSA WLNNSNDPID GNSKMSDHFW KQISQEYNMH APQEQQKSAM QCKNHWTKNT 120 TKVSKFNACY NELKSTYASG QSEDQLMEKV REKYSSAPEC QCCWAVVAAL IEVIGLGHTT 180 NNGTHTT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G132500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316450.1 | 1e-91 | glutathione S-transferase T3-like | ||||
TrEMBL | A0A0Q3J4F9 | 3e-90 | A0A0Q3J4F9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G03310.1 | 1e-89 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G132500.1.p |