PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G130000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 387aa    MW: 42302.1 Da    PI: 9.0698
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G130000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1652111155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Brast05G130000.1.p  52 SIYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 111
                         57*******************888866656446*************************98 PP
2AP252.11.6e-16154205155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Brast05G130000.1.p 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 205
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1352111IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1852121IPR016177DNA-binding domain
PROSITE profilePS5103220.66653119IPR001471AP2/ERF domain
SMARTSM003803.8E-2853125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-1753120IPR001471AP2/ERF domain
PRINTSPR003674.6E-65465IPR001471AP2/ERF domain
CDDcd000189.89E-23154215No hitNo description
PfamPF008471.6E-12154205IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18154215IPR016177DNA-binding domain
PROSITE profilePS5103218.36155213IPR001471AP2/ERF domain
SMARTSM003801.7E-25155219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-18155214IPR001471AP2/ERF domain
PRINTSPR003674.6E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAKPRKNSAA ANNNNSNANN AVAGAAAADV RVKPKKRTRK SVPRESPSQR SSIYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQVYLG AYDEEEAAAR AYDLAALKYW GPDTILNFPL  120
SVYDDELKEM EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGGGVDSA ATAAARNPHP  240
MLAAQEELPA IDRLLDGIAF QHGLRSSSSS PAAAAQEHPL PPARASALLA HTPTTSALSL  300
LLQSPKFKEM IERTSAAETT TTTTSSSSSP RPAPEAASPQ CSFPEDIQTF FGCDDGVGVG  360
YTDVDGLFFG DLSAYASPAF HFELDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G130000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396320.0BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275880.0KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578142.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-113AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1IQ860.0I1IQ86_BRADI; Uncharacterized protein
STRINGBRADI4G30617.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]