PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G125000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 343aa    MW: 36073.7 Da    PI: 8.815
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G125000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.13.4e-313592258
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                        ++v+Y++Cl+NhAa+lG+havDGC+Ef+p+++++ +++ +lkCaACgCHRnFHRr   
  Brast05G125000.1.p 35 AAVMYQDCLRNHAANLGAHAVDGCREFLPTPENDpADPWSLKCAACGCHRNFHRRVLM 92
                        5799***************************9999********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-263790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.7823990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-243989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-183995IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.09E-16209276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-28211277IPR009057Homeodomain-like
TIGRFAMsTIGR015654.9E-22218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDVKYKPVAF PNGSAKKVKP AAAAMAMAPP PPSQAAVMYQ DCLRNHAANL GAHAVDGCRE  60
FLPTPENDPA DPWSLKCAAC GCHRNFHRRV LMEDSPQPPP PPRARGEETP LERLPGVDSD  120
SDSDDGSGYD DERSMSPPPP QHQQPPPPPA HNPVPVAQQP PAAYFSPALA PAPHMLLSLN  180
ASGPGAAPAA RLPVSPVAAA QMLPAGPGPA QHLMPAQRKR FRTKFTPEQK KRMQELSERL  240
GWRLQKRDEA VVDERCRDIG VSKGVFKVWM HNNKHNYLGG HSARRSASAS SAPVAATPAA  300
ASEAAAPPPP AFNPSEAPAA AGFNMNGTGG HPVNGASSSQ SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-192182761775ZF-HD homeobox family protein
1wh7_A3e-192192761875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217231RKRFRTKFTPEQKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G125000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695002e-96AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence.
GenBankAP0056362e-96AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149652e-96AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576527.11e-146zinc-finger homeodomain protein 9
SwissprotQ6ER213e-79ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLI1IQ451e-145I1IQ45_BRADI; Uncharacterized protein
STRINGBRADI4G30240.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-25homeobox protein 34