PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G124400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 42795.2 Da PI: 6.7784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.6e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ Brast05G124400.1.p 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103 579***************************.89***************8888999************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Brast05G124400.1.p 104 IYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 ***956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-58 | 10 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.046 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDERCDMDKS EEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTDPSVP KIPIDKNIPA NDAWAICRIF KKPSSMAQRA 180 LSHSWGPQST AMTEPDLLSA LQSIQASHFA LEGSSRSAEV ALPANRFNSQ QSFQGRQPQK 240 LSSSENGSSC KVINFNRSPS LTHLPDKDVH SGPIILPFET QTLQKSSDAT TVLLSIAPGI 300 INSINEASPN AELEQPEECN GYAVDWVMGT DKGIGNSDED PYTRKPENGY ITDNQCGVSR 360 KIKFPFDLGE DSSDDWNIFV P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 14 | 175 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 14 | 175 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 14 | 175 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 14 | 175 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 14 | 175 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-53 | 14 | 175 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 14 | 175 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G124400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757877.2 | 0.0 | LOW QUALITY PROTEIN: protein FEZ | ||||
Swissprot | Q9ZVH0 | 3e-99 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | I1IQ38 | 0.0 | I1IQ38_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G30177.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-101 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G124400.1.p |
Publications ? help Back to Top | |||
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