PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G121900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 317aa    MW: 33368.2 Da    PI: 6.4474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G121900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-13100146354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ e++k+L
  Brast05G121900.1.p 100 RSHSEAERRRRQRINAHLARLRSLLPNT-----TKTDKASLLAEVLEHVKEL 146
                         78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006695.0E-547138IPR001029Flagellin, D0/D1 domain
PROSITE profilePS5088816.60297146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11100146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-12100149No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14101154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.4E-6198250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071973Biological Processbacterial-type flagellum-dependent cell motility
GO:0005198Molecular Functionstructural molecule activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MWEGGVHGSH HEAARLLPPW FAEPAGGGGG GQGGVFGFGF GAAAVAAHQH HHHQQQRAAA  60
GEAGSSGKVA AGLLGTLQAE LGRMNSAGEM MEAKALAASR SHSEAERRRR QRINAHLARL  120
RSLLPNTTKT DKASLLAEVL EHVKELKRQT SAMTTAPPAA VGGDEDDAGE AQMLPTEADE  180
LGVDAAQDGD GRLVVRASLC CEDRPDLIPD IVRALAALRL RGRRAEITTL GGRVRSVLLI  240
TADEGDQLQE NDDDEGDECA ASHRRHECIA AVQEALRGVM DRRAACSNDT SSSGGGGSMI  300
KRQRMITYGA REQCSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G121900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680221e-177AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578101.11e-151transcription factor bHLH30
SwissprotQ9S7Y13e-71BH030_ARATH; Transcription factor bHLH30
TrEMBLI1IQ121e-149I1IQ12_BRADI; Uncharacterized protein
STRINGBRADI4G29990.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]