PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G119800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 280aa    MW: 30434.6 Da    PI: 5.0449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G119800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Brast05G119800.1.p 14 KGPWTAEEDQKLVSFLLSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding51.52.4e-1671111547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++ E++  ++++++lG++ W++Ia++++ gRt++++k++w+++
  Brast05G119800.1.p  71 SEAEEKTVIELHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                         899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-19563IPR009057Homeodomain-like
PROSITE profilePS5129414.172961IPR017930Myb domain
SuperFamilySSF466891.2E-2611108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002498.3E-141461IPR001005SANT/Myb domain
CDDcd001674.73E-81661No hitNo description
PROSITE profilePS5129426.96962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2564117IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002493.9E-1570111IPR001005SANT/Myb domain
CDDcd001671.43E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEKTVIE LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPATHKPLL LVHPAPPPPP PESASPAEEN KAAAAVVAGR VLQDEFCADD AIMAQLLDDI  180
ILPCDVVDAA PVALDGSSCG AASSPAESSS SSSSSSGLGG GFEDDCWLPQ MMEWPAESMY  240
LMALDDMVTG PAPSSAWEFE DPFNAYQRIA LFEHQDTWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G119800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752631e-148AK375263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578088.11e-154transcription factor MYB20
SwissprotQ9C7U78e-86MYB20_ARATH; Transcription factor MYB20
TrEMBLI1IPZ01e-153I1IPZ0_BRADI; Uncharacterized protein
STRINGBRADI4G29796.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-86myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]