PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G114700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 292aa    MW: 31740.8 Da    PI: 4.8345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G114700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.9e-09163208555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ r RR+ri ++ +eL +l+P       +Kl+ ae+L++A +++k Lq
  Brast05G114700.1.p 163 QSAAARERRRRISEKTAELSRLIPGG-----QKLNTAEMLQEAARHVKLLQ 208
                         5678899999**************86.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-11155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.916158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9161214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6164208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-5174211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAALSFQYPT TAAAPLFHHQ LDDGRDVSYL QDVHPDVTDA LLGFVYDPLD PAVNAGLDEF  60
LNFPLHDDDD QKHRVKKPRA DDGGARFDFT ATDAADGILT GQPWEDNAGA QPATDQVLPQ  120
FLTEFVLPLP PPPPLQVYPP AFVRGSDAQR LQGNDGRQQP STQSAAARER RRRISEKTAE  180
LSRLIPGGQK LNTAEMLQEA ARHVKLLQAQ VGMLALLRTI EEEKVPAMAQ EQMHALLVSG  240
GVQERLAAEG KCLVPRQLVD AVAKDAAVKA NALVNRDLAR FIESLPPAAE Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G114700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318081e-35AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-35AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558751e-35BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-35CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239355.11e-156uncharacterized protein LOC104585091
TrEMBLI1IPU41e-154I1IPU4_BRADI; Uncharacterized protein
STRINGBRADI4G29370.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-20bHLH family protein