PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G094100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 344aa    MW: 37402.4 Da    PI: 7.4582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G094100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05156175120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C  C+ksF+r  n++ H+
  Brast05G094100.1.p 156 FSCAVCNKSFNRFNNMQMHM 175
                         89*****************9 PP
2zf-C2H213.80.00018249271123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C  Cgk+F  + + ++H +++
  Brast05G094100.1.p 249 YACRRCGKRFAVRGDWRTHEKNC 271
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-5152179No hitNo description
SMARTSM003550.72156178IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SMARTSM00355220212244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.71E-6235269No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6235269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558249269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MHSYRAMHPY HGAPAAAASS KQQHAEEDDQ SMLLLSLWPP GHHDAVAASS SSHSAASSSP  60
SWFSHYNNNN GSGGGFLFHD QQQQVVDHPN VSVSLSIAPP SCAGGPNNLQ AAAGGIMSFV  120
AAPPSSPSTT LQQQQQQPSQ YWIPSAAEIL VGSTQFSCAV CNKSFNRFNN MQMHMWGHGS  180
QYRKGSDSLR GAVTTTTTAL TPPPSLMRLP CYCCAEGCRN NIDHPRARPL KDFRTLQTHY  240
RRKHGARPYA CRRCGKRFAV RGDWRTHEKN CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH  300
APHIVESSAG AVDDDEDYDD DDGDLLQHDD NANAGEGSDM VLV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G094100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576402.11e-164zinc finger protein WIP6
SwissprotQ9FX685e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLI1IPA31e-163I1IPA3_BRADI; Uncharacterized protein
STRINGBRADI4G27770.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.13e-96C2H2-like zinc finger protein