PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G092900.3.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 237aa MW: 26217.8 Da PI: 8.6354

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G092900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.1	1.3e-15	40	70	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPktil++m+vkgLtl h+kSHLQkYR+ Brast05G092900.3.p 40 YQATPKTILRTMGVKGLTLFHLKSHLQKYRM 70 58****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-6	36	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-14	40	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-10	41	71	IPR006447	Myb domain, plants
Pfam	PF14379	1.4E-19	111	156	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTSGSYRSDF SLFVLGYCDI CCLHQFRNWN NSSYGQASKY QATPKTILRT MGVKGLTLFH 60 LKSHLQKYRM GKQTGKETSE QSKDGSYLLD AQGGMSLSPR VSTQDAKECQ EVKEALRAQM 120 EMQRCLHDKV EVQKHVDIRM GAHQTYINNI LAKACKIVSE QFASSNFSIS DHNLPELSSC 180 SVMCDTPTDA LSSSIFHQLS VSSMSLHSPG GGKPSPSGME GQLLLQRSPE FKRKSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G092900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577957.1	1e-140	protein PHR1-LIKE 2
TrEMBL	I1IP83	1e-139	I1IP83_BRADI; Uncharacterized protein
STRING	BRADI4G27607.1	1e-139	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast05G092900.3.p