PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G077700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 308aa    MW: 35139.5 Da    PI: 7.8234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G077700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011112134223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+++++++ +L  Hi+  H
  Brast05G077700.1.p 112 SCSVCSRVYPTSRLLSIHISEaH 134
                         6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551184109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086109IPR007087Zinc finger, C2H2
SMARTSM003555111134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
SMARTSM003550.37149174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQQKPEEAME VCARGEDGEA DAPKALVTSL GFWAGTRRRL APDDPFFAAG DMERELLAKH  60
VALDLSDDDR YQLEKMDVAS VSAVCCPIAG CGAHLDCLED FEDHYSTRHT ASCSVCSRVY  120
PTSRLLSIHI SEAHDSFFEA KVARGFPMYE CLVEGCGVKL KTYKSRQQHL IDKHQFPKSF  180
EFFKRAQPSQ RHRQKYHWRK TAYKGEETRD TLMDVDGKSP RQTKWRYRPK QHDHKESIEN  240
KHHHKEAKDN DMEVEQKMDE LTSAVSKLST ADSTPSSITF GHRRAHGLTF VPRSIRQNKQ  300
VSQPEAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G077700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614290.0AK361429.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140F23.
GenBankAK3694620.0AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577552.10.0zinc finger protein 511
TrEMBLI1ILN30.0I1ILN3_BRADI; Uncharacterized protein
STRINGBRADI4G18830.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.18e-94zinc ion binding;nucleic acid binding;zinc ion binding