PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G074700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 396aa    MW: 41885.4 Da    PI: 6.8371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G074700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10225272455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  Brast05G074700.1.p 225 SHSLAERVRREKISERMKLLQDLVPSC----NKVTGKAVMLDEIINYVQSLQ 272
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17219290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11219276No hitNo description
PROSITE profilePS5088815.663221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17221289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7225272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAHDGFLRSF HGLPWPPAVN GATPSFDVAL QMQHALTGWD QQHDAAGSLA YNSALSSLVS  60
SPPSMAAAAA AEAASCSPVL MMDELVSRLG VCGGLAIPSP PQHTSCYSTP LGSPSKPATP  120
LPAGKKKLSR AASSQSLLGE YRKRKAPGAK AKGAITSTKS PEPEARAKKC KVSTAETGAQ  180
EAEEVPIIMP VAASGGNGKG KDEAAEDPHK DYIHVRARRG QATDSHSLAE RVRREKISER  240
MKLLQDLVPS CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPQME FDVDNFLPKD  300
DNEPNAACSL PATAYTAAEG PNSAAFCYPS PEAGKATMQQ SAVAICSKGF EVPSLFVTHG  360
IPASSSHQEL IQNTCNLWED DDLQSVVQMG FRGNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124144KKKLSRAASSQSLLGEYRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G074700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370221e-67BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636601e-67BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268661e-67KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576061.30.0transcription factor bHLH62
SwissprotQ9SRT24e-56BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0Q3ELZ60.0A0A0Q3ELZ6_BRADI; Uncharacterized protein
STRINGBRADI4G19577.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.15e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]