PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G065400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 900aa    MW: 99665.6 Da    PI: 6.2892
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G065400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK932.2e-29541591252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Brast05G065400.1.p 541 EKNVSLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 591
                         89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.563528611IPR003035RWP-RK domain
PfamPF020429.2E-26543591IPR003035RWP-RK domain
SuperFamilySSF542772.35E-20795885No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-20798880No hitNo description
PROSITE profilePS5174523.337801883IPR000270PB1 domain
SMARTSM006661.4E-17801883IPR000270PB1 domain
PfamPF005643.6E-16802882IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MSRMDEIGTP NYSDGGSVLD MDLLMLSAFE GLDSFTELVA GPTFGDSILS CSSVSPVQQL  60
LHTSPSPPPV NPEEQGDVSI SEGSDCTASL ASGEFMHMST PTVPRKVHGG FNLAERMLRA  120
LAILKETSNG GPVLAQVWIP VRNGEHQVLS TSNQPFLLDE RLTGYREVSK QFTFSATEGS  180
GLFPGLPGRV FISGMPEWTS NVMYYNTSEY LRVDYAIHNE VRGSLAMPVF KSSGGTCCAV  240
LEVVMTQEKD NFCAEMDNLS NALQSVHLST VKARAHHQSL TRNQESAFME ILDVLRAVCH  300
EHMLPLALAW VPVCPNSNLN VSAEYGDQAI KFGLRNTDVL CVQESACYIS DTRMHDFVRA  360
CAEHPLEKGQ GVAGNAILSN NPFFSSDVRE YNMHDYPLAH HARKFGLHAA VAIRLRSTYT  420
GNDDYVLEFF LPLMCRVKEE QQLLLDDLSV TMQRVCSSLR TVSDAELEEG GITKSSGIQC  480
SSSDISINSC IQIDASSEIK TNMPLENQIR STGEQLVDQE HANKFKQGTT SHGQKIRSST  540
EKNVSLSVLQ QYFAGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKIKK VNRSLKKIHN  600
VISSVHGVET VIKYDPITGC LVSSVPPSEE PSMMNVEHRC SDPKSIEFDL SNRKFGHDYD  660
AYRREHLGKV VLTKAEYEKT SEIHITTNHG ELVPSSHFGR TLKGPLCQDA SNDSYLTKQL  720
THVVRTDMRV EGAEWKKIIC DSVSMPQQFK MKKETDKDNT NVDHSLPSTS SMTDYSSGVT  780
SSDGTLKNCP KSQPVNENSM NITVKATYKE HNIRLKLLRS MNYQNLVEEI AKRLKLSAST  840
FQLKYKDDED EWVILASDAD LQECFEVLDN TESYIVKVQV RDVLCTAGSS SGSSSTWCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G065400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576097.20.0protein NLP2
RefseqXP_024319185.10.0protein NLP2
TrEMBLA0A0Q3EMH20.0A0A0Q3EMH2_BRADI; Uncharacterized protein
STRINGTraes_4BS_43C44F47B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-176Nin-like family protein