PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G063300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 333aa    MW: 34590 Da    PI: 8.634
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G063300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.2e-3283138359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         +v+Y+eClkNhAa++Gg+a+DGCgEfm+s ge+g+ +alkC+ACgCHRnFHR++v++
  Brast05G063300.1.p  83 AVKYRECLKNHAAAIGGNATDGCGEFMAS-GEDGSLEALKCSACGCHRNFHRKDVDD 138
                         689*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-2884136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2285136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-2985135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3386135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-29211282IPR009057Homeodomain-like
SuperFamilySSF466893.42E-18211281IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDLSGTTRGE LPIPMTAAVV SGAGHAHNGQ QQQQMMMAPL MPAPAAAEAE SNNNAAAPGI  60
GFGKKRPASA SASAGNGGGG ALAVKYRECL KNHAAAIGGN ATDGCGEFMA SGEDGSLEAL  120
KCSACGCHRN FHRKDVDDDL AALGRRLLLA PPHPRGVFPG SGADHHGLPP RQIVMPLSMV  180
HHSSESDDMD GGHGLGLGGA ALLPRSVGGH GGGSSSSQQQ QQQKRFRTKF TAEQKARMLA  240
FAERVGWRLQ RAEDAAVQRF CAEAGVKRRV LKVWMHNNKH SLATKLTSTS PLPIQAQGQP  300
PMAPAPVNSM PPPQEPGPSS SPPQDDQLSQ LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-272242811875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G063300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576116.21e-105zinc-finger homeodomain protein 4
RefseqXP_014757654.11e-105zinc-finger homeodomain protein 4
RefseqXP_014757655.11e-105zinc-finger homeodomain protein 4
SwissprotQ53N877e-69ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0Q3IRE51e-104A0A0Q3IRE5_BRADI; Uncharacterized protein
STRINGBRADI4G21160.11e-105(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-60homeobox protein 31