PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G047400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 28768.4 Da PI: 6.9154 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 11 | 42 | 17 | 48 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++G+g+W+++++ g+ R++k+c++rw +yl Brast05G047400.1.p 11 AEHGPGNWRLVPASTGLARCRKSCRLRWVNYL 42 69****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 53 | 2 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.43E-15 | 11 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 11 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 11 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.78E-4 | 11 | 42 | No hit | No description |
PROSITE profile | PS50090 | 6.226 | 12 | 42 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 13.388 | 43 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-5 | 47 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-4 | 50 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 50 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVRPPCCDKT AEHGPGNWRL VPASTGLARC RKSCRLRWVN YLRPGIRHGS FTPHEDSVIV 60 HLHSLLGNSW ATVSVLAIRL PGWCDDFSMF AWCMHGVRTD NDVKNYWNTH LRKRLEKQEA 120 MGAIFAVPPP PESTSCSSSS SSPYAYSPRS APTKSSQSAS SYANAKPSAV VHAVEANEYT 180 LSPAFDDYSI SCTGTGAELM NFAGDQQPVS LSSIEKWLFE EAVETTDELT SSDACYSVPM 240 LFYEKREETQ VIKLGVKSFT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-14 | 12 | 115 | 21 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G047400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577718.1 | 1e-103 | myb-related protein 306 | ||||
Swissprot | B3VTV7 | 1e-41 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | I1IMM7 | 1e-102 | I1IMM7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G22637.1 | 1e-103 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 7e-44 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G047400.1.p |
Publications ? help Back to Top | |||
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