PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G045800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 305aa    MW: 32448 Da    PI: 10.2126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G045800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-172166147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Brast05G045800.1.p 21 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 66
                        899*****************************.***********996 PP
2Myb_DNA-binding61.41.9e-1974117247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  Brast05G045800.1.p  74 RPFTEEEEERLLAAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 117
                         69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1321667IPR017930Myb domain
SuperFamilySSF466892.51E-3019114IPR009057Homeodomain-like
SMARTSM007172.1E-142069IPR001005SANT/Myb domain
PfamPF002499.8E-172166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-272274IPR009057Homeodomain-like
CDDcd001672.69E-142465No hitNo description
PROSITE profilePS5129428.45668122IPR017930Myb domain
SMARTSM007171.9E-1672120IPR001005SANT/Myb domain
PfamPF002492.5E-1673116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2175117IPR009057Homeodomain-like
CDDcd001671.43E-884115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASSSTTNTS DGGVKPSSCP RGHWRPGEDE KLRQLVEKYG PQNWNSIAEK LEGRSGKSCR  60
LRWFNQLDPR INKRPFTEEE EERLLAAHRV HGNKWALIAR HFPGRTDNAV KNHWHVVRAR  120
RSRERCRLLA KASAHCPASS AFPPFCSYYG SPGQIDFSSF KPASSASSAA GFFFGSSQQH  180
SLPLGPAASA SASASAAAPL LFGASAAASR YRSYERQDQP AAGALSIAFS SASPASRELA  240
LGLMDGHGPA SAAGHGDQYR RPRYYGGRVD GGGGEGETAG QKASGGVEKP RPAFIDFLGV  300
GVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30211217107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265273GGRVDGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G045800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519101e-119JF951910.1 Triticum aestivum clone TaMYB27 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576185.11e-120transcription factor CSA
TrEMBLI1IMN81e-118I1IMN8_BRADI; Uncharacterized protein
STRINGBRADI4G22730.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.17e-57myb domain protein 52