PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G039800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 569aa MW: 63574.1 Da PI: 9.5089 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 66 | 154 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f v++p +++ rl++p +f ++ +++++ ++l+ +sg+ W +l ++ ++++GWkeFv+++ +++g f++F++dgrs+f Brast05G039800.1.p 66 FRVFLPQQYGE--RLRIPLSFN-QYlRNQPAG--VVSLKGQSGNIWLAEL--AVDTEGLFFANGWKEFVRDHSIETGHFLTFRYDGRSKF- 148 55665555554..69******8.665666666..7***************..999999****************************9999. PP .EEEEE- CS B3 92 lvvkvfr 98 v vf+ Brast05G039800.1.p 149 -SVVVFD 154 .666665 PP | |||||||
2 | B3 | 45.5 | 1.3e-14 | 463 | 553 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ s+v + lp f++++ ++ +k+l+l d++g+sW+v++ y + +++GW++F n+L+ D++vF+l+++ + +v Brast05G039800.1.p 463 IMKESYVYVGFFMNLPCGFVRDCL--PRANKKLKLWDPQGKSWDVNYVYYSARAVGAFSGGWSKFSLGNNLEKFDICVFELISK--DNIKV 549 6788999999999*********95..345679***************887777777899*********************9974..44588 PP EEE- CS B3 95 kvfr 98 +++r Brast05G039800.1.p 550 HIYR 553 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-19 | 63 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.535 | 63 | 156 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-19 | 64 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.63E-16 | 65 | 154 | No hit | No description |
SMART | SM01019 | 4.7E-14 | 65 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-14 | 67 | 154 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-23 | 452 | 553 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-22 | 453 | 553 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.478 | 460 | 555 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-13 | 460 | 555 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-12 | 462 | 553 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-20 | 462 | 553 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0034613 | Biological Process | cellular protein localization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MGRRQEQGSR RREQQERERR RREELEKEES TAAAAAMAAA EKEKEKDNEK EKEKEGEEEK 60 FGQQFFRVFL PQQYGERLRI PLSFNQYLRN QPAGVVSLKG QSGNIWLAEL AVDTEGLFFA 120 NGWKEFVRDH SIETGHFLTF RYDGRSKFSV VVFDGKCIEK PSAFHAKPCK DLVVKLENGE 180 GDMDMNATDP SQILVAPLGG SNEDTRERVS EMDANGTILQ RFSSVLKKGK KVSPGVLVGT 240 NKTASTILNK DMSGADQSES VPHEESIGTT RKRIREMDAN GSTSEKCSKV SEMVMKKGPE 300 ASVVNNEAST SLNMDMNAAG PAESLVATPE DSNGTTRKRV KEINVNDSTF KKCSSASVKG 360 KEKCPVASVG TYKSTSTSRK STEESDSESS MLEQSISCIK AEMSSPMRLR KNKDVPKCGK 420 YIATGQRQLV VISQRPPVTE EQKNHALQRA KKFKSKNPFA LQIMKESYVY VGFFMNLPCG 480 FVRDCLPRAN KKLKLWDPQG KSWDVNYVYY SARAVGAFSG GWSKFSLGNN LEKFDICVFE 540 LISKDNIKVH IYRVVPEIIP FLSGPNRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-15 | 438 | 554 | 27 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-15 | 438 | 554 | 27 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | ERRRRE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00192 | DAP | Transfer from AT1G49480 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G039800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576206.1 | 0.0 | B3 domain-containing protein Os11g0197600 isoform X1 | ||||
Swissprot | Q2R9D2 | 3e-84 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | I1IMS6 | 0.0 | I1IMS6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G23270.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60130.2 | 4e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G039800.1.p |
Publications ? help Back to Top | |||
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