PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G016300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 277aa MW: 30985.3 Da PI: 7.4531 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94 | 1.1e-29 | 38 | 141 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ltpsdv+k++rlv+pk++ae++ g + e++ l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ Brast05G016300.1.p 38 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVHFERVRG 128 99***************************9555668889************************************************8865 PP ..SEE..EEEEE- CS B3 88 ..sefelvvkvfr 98 ++ +l+++ +r Brast05G016300.1.p 129 lgTGDRLFIGCRR 141 5455556666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-39 | 33 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-27 | 35 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.58E-26 | 36 | 128 | No hit | No description |
Pfam | PF02362 | 6.5E-27 | 38 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-21 | 38 | 142 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.733 | 38 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAMNHLSQEH HPNAWPLGVA MYTNLHYQQY HYEKEHLFEK ALTPSDVGKL NRLVIPKQHA 60 ERCFPLGGDS GEKGLLLSFD DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV 120 VHFERVRGLG TGDRLFIGCR RRGDVGAPTP PPTVRVAPVS GQNHSREQQQ QPWSPMCYST 180 SGSYPTSPAN SQAYRRSVDH DHSDMHHAGE SQWDADGRTC SPASAPTRRL RLFGVNLDCG 240 PEPEADMSTA TEAMYGYMHQ SPYAAVSSVH SNWGSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-51 | 33 | 146 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-51 | 33 | 146 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G016300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375277 | 0.0 | AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577828.1 | 0.0 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 1e-127 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | I1INF2 | 0.0 | I1INF2_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G25170.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G016300.1.p |
Publications ? help Back to Top | |||
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