PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G009700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 266aa    MW: 28789.7 Da    PI: 9.0872
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G009700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer772.6e-243986856
         ZF-HD_dimer  8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                        eClkNhAa++Gg+a+D CgEfmps geeg+ +a kC+ACgCHRnFH + 
  Brast05G009700.1.p 39 ECLKNHAAAIGGNATDMCGEFMPS-GEEGSLEAPKCSACGCHRNFHCKG 86
                        9**********************9.999******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152323.2183786IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-233985IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.8E-223985IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-183983IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.33E-5142197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-12148197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MPLNMIHSSD SDEMEGQGAS LGDAVLLSRS AGHGVPKPEC LKNHAAAIGG NATDMCGEFM  60
PSGEEGSLEA PKCSACGCHR NFHCKGPRRG LLRPLHQQPP FFGPTRSSSQ IVMPLNTIHS  120
SESDEMEGHG AGIGGGELSH SVGHGGGCGS SLPSQQKRFG TKFTLGQKAR MLGFAERVGW  180
RLQRAEEDAV QRFCHVVRDM WIPRRRNPLP LLHHHGSPPP PPPSLRSTSF SNRRPASLLH  240
RRPAHLLHHQ CNRLLRDIGP VLFGF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G009700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615799e-43AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576116.22e-51zinc-finger homeodomain protein 4
RefseqXP_014757654.12e-51zinc-finger homeodomain protein 4
RefseqXP_014757655.12e-51zinc-finger homeodomain protein 4
SwissprotQ9M9S06e-39ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A0Q3IRE54e-50A0A0Q3IRE5_BRADI; Uncharacterized protein
STRINGBRADI4G21160.16e-51(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-40homeobox protein 31