PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G005100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 443aa    MW: 50123.8 Da    PI: 7.4326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.32.3e-85214394374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                         +L ecA +v++g++ +++  L +++elas  + p+qRl   ++  L +rl+r +++ ++al  ps+  e        a++ f  +sP+l  
  Brast05G005100.1.p  21 VLCECAVHVTEGSFDKTNCSLRKIRELASIVDGPLQRLSLIIADSLFRRLLRPMQGFASALiDPSRYLE--KWCLRVARNSFASISPYLAT 109
                         699*************************************************99999988854544442..3444457778********** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         +++t N+aIle v+ ++ v i+D++ s  +  QW+ +l+ +  Rp+gpp+lR+T+v++    +++ l  ++  L+k A +l  +f+f+  v
  Brast05G005100.1.p 110 GFVTINRAILEQVQDKKVVRIVDLSGSttHQWQWLKILHDFHGRPGGPPELRLTVVHE----DSDFLDYMQALLSKQAGTLMPSFHFDK-V 195
                         ************************8651155678999*********************....9**************************.7 PP

                GRAS 183 akrledleleeL....rvkpgEalaVnlvlqlhrll............................................desvsleserd 225
                         + rle+l++++L    +++ gEa++++++lq+hrll                                            + + ++++   
  Brast05G005100.1.p 196 VGRLEALDFSNLreilKINFGEAVVISCALQMHRLLavdddddasrdgiaqlqqmankahlkqmmmagsprstltypqtpSPQRQIPKLLV 286
                         999****9999844335555*********************************************************98866677777888 PP

                GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetle 313
                         ++L++v+ l+P++vv++eqeadhn++ + erf+e l+yy+alfdsl++    ++r+++er+ vE++ll++ei+n++ ceg++r erhe+l+
  Brast05G005100.1.p 287 SFLSAVRALKPNIVVMMEQEADHNAPLLGERFAEMLRYYAALFDSLHVAaaaAGRADDERARVEKVLLREEIKNMLVCEGSQRHERHEKLS 377
                         9*********************************************65522256777********************************** PP

                GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +W++ ++++ F++vpls +a  + k  l   + ++   +ee+++ l+l+W +  L+s+SaWr
  Brast05G005100.1.p 378 QWEMHMNRCEFQSVPLSFEAIREGKEKLMSSGlKECRGIEEDKHRLLLCWGETHLYSISAWR 439
                         ********************************888899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.921418IPR005202Transcription factor GRAS
PfamPF035147.9E-8321439IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MYGAGSQEQR MQDHLAQLGP VLCECAVHVT EGSFDKTNCS LRKIRELASI VDGPLQRLSL  60
IIADSLFRRL LRPMQGFASA LIDPSRYLEK WCLRVARNSF ASISPYLATG FVTINRAILE  120
QVQDKKVVRI VDLSGSTTHQ WQWLKILHDF HGRPGGPPEL RLTVVHEDSD FLDYMQALLS  180
KQAGTLMPSF HFDKVVGRLE ALDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDDDDAS  240
RDGIAQLQQM ANKAHLKQMM MAGSPRSTLT YPQTPSPQRQ IPKLLVSFLS AVRALKPNIV  300
VMMEQEADHN APLLGERFAE MLRYYAALFD SLHVAAAAAG RADDERARVE KVLLREEIKN  360
MLVCEGSQRH ERHEKLSQWE MHMNRCEFQS VPLSFEAIRE GKEKLMSSGL KECRGIEEDK  420
HRLLLCWGET HLYSISAWRP HA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-302444225382Protein SCARECROW
5b3h_A7e-302444224381Protein SCARECROW
5b3h_D7e-302444224381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576356.20.0scarecrow-like protein 3 isoform X2
TrEMBLA0A0Q3EQ720.0A0A0Q3EQ72_BRADI; Uncharacterized protein
STRINGBRADI4G26520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-65scarecrow-like 3