PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G001100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 349aa MW: 38776 Da PI: 8.3629

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G001100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.4	2.4e-31	51	104	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+ave+LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ Brast05G001100.1.p 51 PRLRWTPELHHCFVRAVERLGGQDHATPKLVLQLMNVRGLSIGHVKSHLQMYRS 104 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.064	47	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-30	47	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-15	48	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	50	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	52	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAGAIGKLLG NDHGSSEEGS NDDDDSTVEE EDHRKTTGDS SVRPYVRSKN PRLRWTPELH 60 HCFVRAVERL GGQDHATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDDS GQVILGGQLQ 120 QQGGQTYNVA HHVPYHHRQS TSAGTMLSRF GTAAPWRMSC HEPFWFHGHR FLGSKPYYYP 180 SSTSSSSSSH HAEALLRTRA HQHVTRSGIP ASMMTTQGYC SSINDQYHER KLQAATTSTT 240 VRISDDRSSH GGDLDLSLSL DIGGTRPEMK RKRWCISWGK EDDDQMGDGN EEKIDQSTAN 300 MLSLSLISPS GASSDQRMLD QEVIRVDKRG NNKERNVGRR ASTLDLTI*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAGAIGKLLG NDHGSSEEGS NDDDDSTVEE EDHRKTTGDS SVRPYVRSKN PRLRWTPELH  60
HCFVRAVERL GGQDHATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDDS GQVILGGQLQ  120
QQGGQTYNVA HHVPYHHRQS TSAGTMLSRF GTAAPWRMSC HEPFWFHGHR FLGSKPYYYP  180
SSTSSSSSSH HAEALLRTRA HQHVTRSGIP ASMMTTQGYC SSINDQYHER KLQAATTSTT  240
VRISDDRSSH GGDLDLSLSL DIGGTRPEMK RKRWCISWGK EDDDQMGDGN EEKIDQSTAN  300
MLSLSLISPS GASSDQRMLD QEVIRVDKRG NNKERNVGRR ASTLDLTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G001100.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373646	4e-64	AK373646.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3038H19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577903.2	0.0	two-component response regulator ARR14 isoform X1
TrEMBL	A0A0Q3HN97	0.0	A0A0Q3HN97_BRADI; Uncharacterized protein
STRING	TRIUR3_10881-P1	1e-105	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast05G001100.1.p